Literature DB >> 21217689

Directed evolution of hydrolases for prevention of G-type nerve agent intoxication.

Rinkoo D Gupta1, Moshe Goldsmith, Yacov Ashani, Yair Simo, Gavriel Mullokandov, Hagit Bar, Moshe Ben-David, Haim Leader, Raanan Margalit, Israel Silman, Joel L Sussman, Dan S Tawfik.   

Abstract

Organophosphate nerve agents are extremely lethal compounds. Rapid in vivo organophosphate clearance requires bioscavenging enzymes with catalytic efficiencies of >10(7) (M(-1) min(-1)). Although serum paraoxonase (PON1) is a leading candidate for such a treatment, it hydrolyzes the toxic S(p) isomers of G-agents with very slow rates. We improved PON1's catalytic efficiency by combining random and targeted mutagenesis with high-throughput screening using fluorogenic analogs in emulsion compartments. We thereby enhanced PON1's activity toward the coumarin analog of S(p)-cyclosarin by ∼10(5)-fold. We also developed a direct screen for protection of acetylcholinesterase from inactivation by nerve agents and used it to isolate variants that degrade the toxic isomer of the coumarin analog and cyclosarin itself with k(cat)/K(M) ∼ 10(7) M(-1) min(-1). We then demonstrated the in vivo prophylactic activity of an evolved variant. These evolved variants and the newly developed screens provide the basis for engineering PON1 for prophylaxis against other G-type agents.

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Year:  2011        PMID: 21217689     DOI: 10.1038/nchembio.510

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  26 in total

1.  Prophylaxis against organophosphate poisoning by an enzyme hydrolysing organophosphorus compounds in mice.

Authors:  Y Ashani; N Rothschild; Y Segall; D Levanon; L Raveh
Journal:  Life Sci       Date:  1991       Impact factor: 5.037

Review 2.  Stoichiometric and catalytic scavengers as protection against nerve agent toxicity: a mini review.

Authors:  David E Lenz; David Yeung; J Richard Smith; Richard E Sweeney; Lucille A Lumley; Douglas M Cerasoli
Journal:  Toxicology       Date:  2006-12-01       Impact factor: 4.221

3.  Stereoselective detoxification of chiral sarin and soman analogues by phosphotriesterase.

Authors:  W S Li; K T Lum; M Chen-Goodspeed; M A Sogorb; F M Raushel
Journal:  Bioorg Med Chem       Date:  2001-08       Impact factor: 3.641

4.  High-throughput screening of enzyme libraries: thiolactonases evolved by fluorescence-activated sorting of single cells in emulsion compartments.

Authors:  Amir Aharoni; Gil Amitai; Kalia Bernath; Shlomo Magdassi; Dan S Tawfik
Journal:  Chem Biol       Date:  2005-12

5.  Improving catalytic function by ProSAR-driven enzyme evolution.

Authors:  Richard J Fox; S Christopher Davis; Emily C Mundorff; Lisa M Newman; Vesna Gavrilovic; Steven K Ma; Loleta M Chung; Charlene Ching; Sarena Tam; Sheela Muley; John Grate; John Gruber; John C Whitman; Roger A Sheldon; Gjalt W Huisman
Journal:  Nat Biotechnol       Date:  2007-02-18       Impact factor: 54.908

6.  Asymmetric fluorogenic organophosphates for the development of active organophosphate hydrolases with reversed stereoselectivity.

Authors:  Gabi Amitai; Rellie Adani; Guy Yacov; Shelly Yishay; Shai Teitlboim; Liat Tveria; Osnat Limanovich; Moshe Kushnir; Haim Meshulam
Journal:  Toxicology       Date:  2006-10-13       Impact factor: 4.221

7.  The influence of combinations of oximes on the reactivating and therapeutic efficacy of antidotal treatment of soman poisoning in rats and mice.

Authors:  Jiri Kassa; Jana Zdarova Karasova; Filip Caisberger; Jiri Bajgar
Journal:  Toxicol Mech Methods       Date:  2009-11       Impact factor: 2.987

8.  Incorporating Synthetic Oligonucleotides via Gene Reassembly (ISOR): a versatile tool for generating targeted libraries.

Authors:  Asael Herman; Dan S Tawfik
Journal:  Protein Eng Des Sel       Date:  2007-05-05       Impact factor: 1.650

9.  Mechanism for potent reactivation ability of H oximes analyzed by reactivation kinetic studies with cholinesterases from different species.

Authors:  Chunyuan Luo; Carolyn Chambers; Yerie Yang; Ashima Saxena
Journal:  Chem Biol Interact       Date:  2010-01-21       Impact factor: 5.192

10.  In vivo administration of BL-3050: highly stable engineered PON1-HDL complexes.

Authors:  Leonid Gaidukov; Dganit Bar; Shiri Yacobson; Esmira Naftali; Olga Kaufman; Rinat Tabakman; Dan S Tawfik; Etgar Levy-Nissenbaum
Journal:  BMC Clin Pharmacol       Date:  2009-11-17
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  48 in total

Review 1.  Divergence and convergence in enzyme evolution: parallel evolution of paraoxonases from quorum-quenching lactonases.

Authors:  Mikael Elias; Dan S Tawfik
Journal:  J Biol Chem       Date:  2011-11-08       Impact factor: 5.157

2.  Computational redesign of a mononuclear zinc metalloenzyme for organophosphate hydrolysis.

Authors:  Sagar D Khare; Yakov Kipnis; Per Greisen; Ryo Takeuchi; Yacov Ashani; Moshe Goldsmith; Yifan Song; Jasmine L Gallaher; Israel Silman; Haim Leader; Joel L Sussman; Barry L Stoddard; Dan S Tawfik; David Baker
Journal:  Nat Chem Biol       Date:  2012-02-05       Impact factor: 15.040

3.  Syrian gas attack reinforces need for better anti-sarin drugs.

Authors:  Elie Dolgin
Journal:  Nat Med       Date:  2013-10       Impact factor: 53.440

Review 4.  Improving the stability and activity of oral therapeutic enzymes-recent advances and perspectives.

Authors:  Gregor Fuhrmann; Jean-Christophe Leroux
Journal:  Pharm Res       Date:  2013-11-02       Impact factor: 4.200

5.  Characterization of human paraoxonase 1 variants suggest that His residues at 115 and 134 positions are not always needed for the lactonase/arylesterase activities of the enzyme.

Authors:  Priyanka Bajaj; Rajan K Tripathy; Geetika Aggarwal; Abhay H Pande
Journal:  Protein Sci       Date:  2013-10-26       Impact factor: 6.725

6.  In vitro evaluation of the catalytic activity of paraoxonases and phosphotriesterases predicts the enzyme circulatory levels required for in vivo protection against organophosphate intoxications.

Authors:  Yacov Ashani; Haim Leader; Nidhi Aggarwal; Israel Silman; Franz Worek; Joel L Sussman; Moshe Goldsmith
Journal:  Chem Biol Interact       Date:  2016-05-06       Impact factor: 5.192

7.  In vitro detoxification of cyclosarin in human blood pre-incubated ex vivo with recombinant serum paraoxonases.

Authors:  Yacov Ashani; Moshe Goldsmith; Haim Leader; Israel Silman; Joel L Sussman; Dan S Tawfik
Journal:  Toxicol Lett       Date:  2011-07-23       Impact factor: 4.372

8.  Reactibodies generated by kinetic selection couple chemical reactivity with favorable protein dynamics.

Authors:  Ivan Smirnov; Eugénie Carletti; Inna Kurkova; Florian Nachon; Yvain Nicolet; Vladimir A Mitkevich; Hélène Débat; Bérangère Avalle; Alexey A Belogurov; Nikita Kuznetsov; Andrey Reshetnyak; Patrick Masson; Alexander G Tonevitsky; Natalia Ponomarenko; Alexander A Makarov; Alain Friboulet; Alfonso Tramontano; Alexander Gabibov
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-06       Impact factor: 11.205

Review 9.  Methods for the directed evolution of proteins.

Authors:  Michael S Packer; David R Liu
Journal:  Nat Rev Genet       Date:  2015-06-09       Impact factor: 53.242

10.  Microfluidic droplet platform for ultrahigh-throughput single-cell screening of biodiversity.

Authors:  Stanislav S Terekhov; Ivan V Smirnov; Anastasiya V Stepanova; Tatyana V Bobik; Yuliana A Mokrushina; Natalia A Ponomarenko; Alexey A Belogurov; Maria P Rubtsova; Olga V Kartseva; Marina O Gomzikova; Alexey A Moskovtsev; Anton S Bukatin; Michael V Dubina; Elena S Kostryukova; Vladislav V Babenko; Maria T Vakhitova; Alexander I Manolov; Maja V Malakhova; Maria A Kornienko; Alexander V Tyakht; Anna A Vanyushkina; Elena N Ilina; Patrick Masson; Alexander G Gabibov; Sidney Altman
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-15       Impact factor: 11.205

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