Literature DB >> 22067163

Size distribution of amyloid nanofibrils.

Raffaela Cabriolu1, Dimo Kashchiev, Stefan Auer.   

Abstract

We consider the size distribution of amyloid nanofibrils (protofilaments) in nucleating protein solutions when the nucleation process occurs by the mechanism of direct polymerization of β-strands (extended peptides or protein segments) into β-sheets. Employing the atomistic nucleation theory, we derive a general expression for the stationary size distribution of amyloid nanofibrils constituted of successively layered β-sheets. The application of this expression to amyloid β(1-40) (Aβ(40)) fibrils allows us to determine the nanofibril size distribution as a function of the protein concentration and temperature. The distribution is most remarkable with its exhibiting a series of peaks positioned at "magic" nanofibril sizes (or lengths), which are due to deep local minima in the work for fibril formation. This finding of magic sizes or lengths is consistent with experimental results for the size distribution of aggregates in solutions of Aβ(40) proteins. Also, our approach makes it possible to gain insight into the effect of point mutations on the nanofibril size distribution, an effect that may play a role in experimentally observed substantial differences in the fibrillation lag-time of wild-type and point-mutated amyloid-β proteins.
Copyright © 2011 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Mesh:

Substances:

Year:  2011        PMID: 22067163      PMCID: PMC3207154          DOI: 10.1016/j.bpj.2011.09.053

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  67 in total

1.  High-resolution molecular structure of a peptide in an amyloid fibril determined by magic angle spinning NMR spectroscopy.

Authors:  Christopher P Jaroniec; Cait E MacPhee; Vikram S Bajaj; Michael T McMahon; Christopher M Dobson; Robert G Griffin
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-08       Impact factor: 11.205

2.  Phase diagram of alpha-helical and beta-sheet forming peptides.

Authors:  Stefan Auer; Dimo Kashchiev
Journal:  Phys Rev Lett       Date:  2010-04-23       Impact factor: 9.161

3.  Atomistic theory of amyloid fibril nucleation.

Authors:  Raffaela Cabriolu; Dimo Kashchiev; Stefan Auer
Journal:  J Chem Phys       Date:  2010-12-14       Impact factor: 3.488

4.  Molecular dynamics simulations of spontaneous fibril formation by random-coil peptides.

Authors:  Hung D Nguyen; Carol K Hall
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-08       Impact factor: 11.205

5.  The aggregation kinetics of Alzheimer's beta-amyloid peptide is controlled by stochastic nucleation.

Authors:  Peter Hortschansky; Volker Schroeckh; Tony Christopeit; Giorgia Zandomeneghi; Marcus Fändrich
Journal:  Protein Sci       Date:  2005-06-03       Impact factor: 6.725

6.  Spontaneous fibril formation by polyalanines; discontinuous molecular dynamics simulations.

Authors:  Hung D Nguyen; Carol K Hall
Journal:  J Am Chem Soc       Date:  2006-02-15       Impact factor: 15.419

7.  Quasihomogeneous nucleation of amyloid beta yields numerical bounds for the critical radius, the surface tension, and the free energy barrier for nucleus formation.

Authors:  K Garai; B Sahoo; P Sengupta; S Maiti
Journal:  J Chem Phys       Date:  2008-01-28       Impact factor: 3.488

8.  Toward a better description of the nucleation rate of crystals and crystalline monolayers.

Authors:  Dimo Kashchiev
Journal:  J Chem Phys       Date:  2008-10-28       Impact factor: 3.488

9.  A generic mechanism of emergence of amyloid protofilaments from disordered oligomeric aggregates.

Authors:  Stefan Auer; Filip Meersman; Christopher M Dobson; Michele Vendruscolo
Journal:  PLoS Comput Biol       Date:  2008-11-14       Impact factor: 4.475

10.  Nucleation of protein fibrillation by nanoparticles.

Authors:  Sara Linse; Celia Cabaleiro-Lago; Wei-Feng Xue; Iseult Lynch; Stina Lindman; Eva Thulin; Sheena E Radford; Kenneth A Dawson
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-07       Impact factor: 11.205

View more
  1 in total

1.  Single-particle characterization of Aβ oligomers in solution.

Authors:  Erik C Yusko; Panchika Prangkio; David Sept; Ryan C Rollings; Jiali Li; Michael Mayer
Journal:  ACS Nano       Date:  2012-06-21       Impact factor: 15.881

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.