Literature DB >> 20482086

Phase diagram of alpha-helical and beta-sheet forming peptides.

Stefan Auer1, Dimo Kashchiev.   

Abstract

The intrinsic property of proteins to form structural motifs such as alpha helices and beta sheets leads to a complex phase behavior in which proteins can assemble into various types of aggregates including crystals, liquidlike phases of unfolded or natively folded proteins, and amyloid fibrils. Here we use a coarse-grained protein model that enables us to perform Monte Carlo simulations for determining the phase diagram of natively folded alpha-helical and unfolded beta-sheet forming peptides. The simulations reveal the existence of various metastable peptide phases. The liquidlike phases are metastable with respect to the fibrillar phases, and there is a hierarchy of metastability.

Mesh:

Substances:

Year:  2010        PMID: 20482086     DOI: 10.1103/PhysRevLett.104.168105

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  9 in total

1.  Spontaneous formation of twisted Aβ(16-22) fibrils in large-scale molecular-dynamics simulations.

Authors:  Mookyung Cheon; Iksoo Chang; Carol K Hall
Journal:  Biophys J       Date:  2011-11-15       Impact factor: 4.033

2.  Size distribution of amyloid nanofibrils.

Authors:  Raffaela Cabriolu; Dimo Kashchiev; Stefan Auer
Journal:  Biophys J       Date:  2011-11-01       Impact factor: 4.033

3.  Nucleation of polymorphic amyloid fibrils.

Authors:  Stefan Auer
Journal:  Biophys J       Date:  2015-03-10       Impact factor: 4.033

4.  Thermodynamic phase diagram of amyloid-β (16-22) peptide.

Authors:  Yiming Wang; Samuel J Bunce; Sheena E Radford; Andrew J Wilson; Stefan Auer; Carol K Hall
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-23       Impact factor: 11.205

5.  Influence of temperature on formation of perfect tau fragment fibrils using PRIME20/DMD simulations.

Authors:  Mookyung Cheon; Iksoo Chang; Carol K Hall
Journal:  Protein Sci       Date:  2012-09-17       Impact factor: 6.725

6.  Impact of sequence on the molecular assembly of short amyloid peptides.

Authors:  Victoria A Wagoner; Mookyung Cheon; Iksoo Chang; Carol K Hall
Journal:  Proteins       Date:  2014-02-18

7.  Computer simulation study of amyloid fibril formation by palindromic sequences in prion peptides.

Authors:  Victoria A Wagoner; Mookyung Cheon; Iksoo Chang; Carol K Hall
Journal:  Proteins       Date:  2011-05-09

Review 8.  Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis.

Authors:  Phuong H Nguyen; Ayyalusamy Ramamoorthy; Bikash R Sahoo; Jie Zheng; Peter Faller; John E Straub; Laura Dominguez; Joan-Emma Shea; Nikolay V Dokholyan; Alfonso De Simone; Buyong Ma; Ruth Nussinov; Saeed Najafi; Son Tung Ngo; Antoine Loquet; Mara Chiricotto; Pritam Ganguly; James McCarty; Mai Suan Li; Carol Hall; Yiming Wang; Yifat Miller; Simone Melchionna; Birgit Habenstein; Stepan Timr; Jiaxing Chen; Brianna Hnath; Birgit Strodel; Rakez Kayed; Sylvain Lesné; Guanghong Wei; Fabio Sterpone; Andrew J Doig; Philippe Derreumaux
Journal:  Chem Rev       Date:  2021-02-05       Impact factor: 60.622

9.  Mapping the Protein Fold Universe Using the CamTube Force Field in Molecular Dynamics Simulations.

Authors:  Predrag Kukic; Arvind Kannan; Maurits J J Dijkstra; Sanne Abeln; Carlo Camilloni; Michele Vendruscolo
Journal:  PLoS Comput Biol       Date:  2015-10-27       Impact factor: 4.475

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.