Literature DB >> 22065539

5-Cyclo-pentyl-2-(4-fluoro-phen-yl)-3-methyl-sulfinyl-1-benzofuran.

Pil Ja Seo, Hong Dae Choi, Byeng Wha Son, Uk Lee.   

Abstract

In the title compound, C(20)H(19)FO(2)S, the cyclo-pentyl ring adopts an envelope conformation. The 4-fluoro-phenyl ring makes a dihedral angle of 27.10 (7)° with the mean plane of the benzofuran fragment. In the crystal, mol-ecules are linked by weak inter-molecular C-H⋯O hydrogen bonds and C-H⋯π inter-actions. In the cyclo-pentyl ring, one C atom is disordered over two orientations with site-occupancy factors of 0.617 (7) and 0.383 (7).

Entities:  

Year:  2011        PMID: 22065539      PMCID: PMC3201219          DOI: 10.1107/S1600536811036087

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological activity of benzofuran compounds, see: Aslam et al. (2009 ▶); Galal et al. (2009 ▶); Khan et al. (2005 ▶). For natural products with benzofuran rings, see: Akgul & Anil (2003 ▶); Soekamto et al. (2003 ▶). For structural studies of related 2-(4-fluoro­phen­yl)-3-methyl­sulfinyl-1-benzofuran derivatives, see: Choi et al. (2010 ▶, 2011 ▶).

Experimental

Crystal data

C20H19FO2S M = 342.41 Orthorhombic, a = 20.0254 (13) Å b = 33.197 (2) Å c = 10.0233 (7) Å V = 6663.3 (8) Å3 Z = 16 Mo Kα radiation μ = 0.21 mm−1 T = 173 K 0.35 × 0.26 × 0.19 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.930, T max = 0.961 16962 measured reflections 4136 independent reflections 3915 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.106 S = 1.06 4136 reflections 223 parameters 96 restraints H-atom parameters constrained Δρmax = 0.48 e Å−3 Δρmin = −0.37 e Å−3 Absolute structure: Flack (1983 ▶), 1949 Friedel pairs Flack parameter: 0.15 (7) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536811036087/gk2398sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811036087/gk2398Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811036087/gk2398Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H19FO2SF(000) = 2880
Mr = 342.41Dx = 1.365 Mg m3
Orthorhombic, Fdd2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: F 2 -2dCell parameters from 6619 reflections
a = 20.0254 (13) Åθ = 2.4–27.7°
b = 33.197 (2) ŵ = 0.21 mm1
c = 10.0233 (7) ÅT = 173 K
V = 6663.3 (8) Å3Block, colourless
Z = 160.35 × 0.26 × 0.19 mm
Bruker SMART APEXII CCD diffractometer4136 independent reflections
Radiation source: rotating anode3915 reflections with I > 2σ(I)
graphite multilayerRint = 0.034
Detector resolution: 10.0 pixels mm-1θmax = 28.3°, θmin = 2.4°
φ and ω scansh = −26→23
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −44→42
Tmin = 0.930, Tmax = 0.961l = −13→13
16962 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.106w = 1/[σ2(Fo2) + (0.0576P)2 + 8.9505P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
4136 reflectionsΔρmax = 0.48 e Å3
223 parametersΔρmin = −0.37 e Å3
96 restraintsAbsolute structure: Flack (1983), 1949 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.15 (7)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.28603 (2)0.120706 (14)0.30091 (12)0.02721 (11)
F10.22523 (7)0.07977 (4)−0.34573 (18)0.0441 (3)
O10.31307 (7)0.21374 (4)0.06022 (18)0.0312 (3)
O20.33631 (8)0.11882 (5)0.4113 (2)0.0370 (4)
C10.29639 (10)0.16799 (6)0.2227 (2)0.0262 (4)
C20.32275 (10)0.20417 (6)0.2840 (2)0.0290 (4)
C30.34184 (12)0.21599 (7)0.4113 (2)0.0357 (5)
H30.33570.19840.48510.043*
C40.37027 (13)0.25424 (8)0.4294 (3)0.0404 (5)
C50.37902 (12)0.27952 (7)0.3188 (3)0.0396 (5)
H50.39880.30520.33200.048*
C60.36010 (12)0.26866 (7)0.1916 (3)0.0374 (5)
H60.36580.28620.11750.045*
C70.33230 (11)0.23083 (6)0.1784 (2)0.0305 (4)
C80.29208 (10)0.17501 (6)0.0893 (2)0.0274 (4)
C90.39134 (15)0.26922 (8)0.5643 (3)0.0533 (7)
H9A0.41600.29510.55210.064*0.617 (7)
H9B0.42730.28830.53610.064*0.383 (7)
C10A0.33241 (16)0.27685 (18)0.6576 (2)0.0594 (11)0.617 (7)
H10A0.30500.29970.62550.071*0.617 (7)
H10B0.30380.25260.66440.071*0.617 (7)
C10B0.3491 (5)0.2980 (3)0.64769 (16)0.0594 (11)0.383 (7)
H10C0.30110.29450.62780.071*0.383 (7)
H10D0.36170.32630.62980.071*0.383 (7)
C110.3643 (2)0.28668 (11)0.79210 (19)0.0710 (10)
H11A0.37450.31580.79920.085*0.617 (7)
H11B0.33460.27890.86670.085*0.617 (7)
H11C0.37040.31130.84660.085*0.383 (7)
H11D0.32690.27090.83010.085*0.383 (7)
C120.42736 (18)0.26191 (9)0.7924 (3)0.0585 (7)
H12A0.42530.24070.86180.070*
H12B0.46690.27910.80920.070*
C130.4306 (2)0.24326 (13)0.6533 (4)0.0819 (13)
H13A0.47750.24180.62230.098*
H13B0.41180.21570.65460.098*
C140.27300 (10)0.15066 (6)−0.0241 (2)0.0271 (4)
C150.22789 (11)0.11913 (7)−0.0111 (2)0.0312 (4)
H150.20760.11410.07300.037*
C160.21211 (11)0.09501 (7)−0.1192 (2)0.0338 (4)
H160.18190.0731−0.10990.041*
C170.24099 (11)0.10340 (7)−0.2402 (2)0.0318 (4)
C180.28529 (11)0.13457 (7)−0.2591 (2)0.0349 (5)
H180.30420.1397−0.34430.042*
C190.30136 (11)0.15821 (7)−0.1500 (2)0.0326 (4)
H190.33200.1798−0.16020.039*
C200.20733 (10)0.13041 (8)0.3791 (3)0.0356 (5)
H20A0.19520.10750.43590.053*
H20B0.17300.13420.31050.053*
H20C0.21070.15480.43370.053*
U11U22U33U12U13U23
S10.0302 (2)0.0261 (2)0.0254 (2)0.00067 (19)−0.00003 (18)0.00238 (18)
F10.0492 (8)0.0511 (8)0.0321 (7)−0.0062 (6)−0.0020 (6)−0.0098 (6)
O10.0371 (8)0.0276 (7)0.0290 (7)−0.0008 (6)0.0008 (6)0.0027 (6)
O20.0312 (8)0.0433 (9)0.0365 (8)0.0021 (7)−0.0056 (6)0.0111 (7)
C10.0253 (9)0.0257 (9)0.0277 (9)0.0004 (7)0.0014 (8)0.0018 (7)
C20.0262 (9)0.0265 (9)0.0344 (10)0.0029 (7)0.0022 (8)−0.0022 (7)
C30.0411 (12)0.0342 (11)0.0319 (10)−0.0022 (9)0.0019 (9)−0.0036 (9)
C40.0419 (13)0.0368 (11)0.0425 (12)−0.0004 (9)0.0001 (10)−0.0133 (9)
C50.0400 (12)0.0279 (10)0.0510 (14)−0.0023 (9)0.0008 (10)−0.0085 (10)
C60.0383 (12)0.0247 (9)0.0492 (13)0.0006 (8)0.0032 (10)0.0004 (8)
C70.0301 (10)0.0277 (9)0.0336 (10)0.0036 (8)0.0002 (7)−0.0022 (8)
C80.0239 (9)0.0288 (9)0.0294 (10)0.0018 (7)0.0029 (7)0.0033 (7)
C90.0850 (19)0.0369 (11)0.0381 (11)−0.0150 (12)0.0014 (12)−0.0100 (10)
C10A0.086 (2)0.053 (3)0.0391 (13)0.0215 (19)−0.0073 (13)0.0017 (14)
C10B0.086 (2)0.053 (3)0.0391 (13)0.0215 (19)−0.0073 (13)0.0017 (14)
C110.108 (3)0.071 (2)0.0337 (10)0.0304 (18)−0.0064 (14)−0.0035 (12)
C120.087 (2)0.0503 (15)0.0382 (13)0.0047 (14)−0.0166 (15)0.0034 (12)
C130.086 (3)0.096 (3)0.064 (2)0.046 (2)−0.032 (2)−0.032 (2)
C140.0247 (9)0.0303 (9)0.0261 (9)0.0018 (7)−0.0001 (7)0.0017 (7)
C150.0275 (10)0.0405 (11)0.0256 (10)−0.0026 (8)0.0026 (8)−0.0002 (8)
C160.0300 (10)0.0366 (11)0.0348 (11)−0.0049 (8)−0.0005 (8)−0.0014 (9)
C170.0287 (10)0.0396 (11)0.0271 (10)0.0032 (8)−0.0026 (8)−0.0040 (8)
C180.0359 (11)0.0436 (12)0.0253 (10)0.0000 (9)0.0018 (8)0.0016 (9)
C190.0324 (11)0.0368 (10)0.0284 (9)−0.0028 (8)0.0031 (8)0.0054 (8)
C200.0258 (10)0.0486 (12)0.0324 (11)−0.0019 (9)0.0010 (8)0.0075 (9)
S1—O21.4973 (16)C10B—C111.5258 (14)
S1—C11.767 (2)C10B—H10C0.9900
S1—C201.789 (2)C10B—H10D0.9900
F1—C171.354 (2)C11—C121.507 (5)
O1—C71.369 (3)C11—H11A0.9900
O1—C81.384 (2)C11—H11B0.9900
C1—C81.360 (3)C11—H11C0.9900
C1—C21.449 (3)C11—H11D0.9900
C2—C31.388 (3)C12—C131.527 (4)
C2—C71.393 (3)C12—H12A0.9900
C3—C41.403 (3)C12—H12B0.9900
C3—H30.9500C13—H13A0.9900
C4—C51.402 (4)C13—H13B0.9900
C4—C91.501 (4)C14—C151.389 (3)
C5—C61.378 (4)C14—C191.406 (3)
C5—H50.9500C15—C161.384 (3)
C6—C71.380 (3)C15—H150.9500
C6—H60.9500C16—C171.373 (3)
C8—C141.447 (3)C16—H160.9500
C9—C131.469 (5)C17—C181.376 (3)
C9—C10B1.5249 (14)C18—C191.384 (3)
C9—C10A1.5272 (14)C18—H180.9500
C9—H9A1.0000C19—H190.9500
C9—H9B1.0000C20—H20A0.9800
C10A—C111.5266 (14)C20—H20B0.9800
C10A—H10A0.9900C20—H20C0.9800
C10A—H10B0.9900
O2—S1—C1106.63 (9)C12—C11—C10A103.6 (3)
O2—S1—C20106.03 (10)C12—C11—H11A111.0
C1—S1—C2097.93 (10)C10B—C11—H11A82.5
C7—O1—C8106.75 (15)C10A—C11—H11A111.0
C8—C1—C2107.34 (18)C12—C11—H11B111.0
C8—C1—S1125.54 (16)C10B—C11—H11B131.4
C2—C1—S1126.22 (16)C10A—C11—H11B111.0
C3—C2—C7118.73 (19)H11A—C11—H11B109.0
C3—C2—C1136.4 (2)C12—C11—H11C110.2
C7—C2—C1104.73 (18)C10B—C11—H11C110.2
C2—C3—C4119.1 (2)C10A—C11—H11C135.7
C2—C3—H3120.4H11B—C11—H11C82.8
C4—C3—H3120.4C12—C11—H11D110.2
C5—C4—C3119.3 (2)C10B—C11—H11D110.2
C5—C4—C9118.6 (2)C10A—C11—H11D84.9
C3—C4—C9122.0 (2)H11A—C11—H11D130.1
C6—C5—C4122.7 (2)H11C—C11—H11D108.5
C6—C5—H5118.6C11—C12—C13104.8 (2)
C4—C5—H5118.6C11—C12—H12A110.8
C5—C6—C7116.0 (2)C13—C12—H12A110.8
C5—C6—H6122.0C11—C12—H12B110.8
C7—C6—H6122.0C13—C12—H12B110.8
O1—C7—C6125.0 (2)H12A—C12—H12B108.9
O1—C7—C2110.83 (17)C9—C13—C12107.1 (3)
C6—C7—C2124.1 (2)C9—C13—H13A110.3
C1—C8—O1110.33 (18)C12—C13—H13A110.3
C1—C8—C14133.92 (19)C9—C13—H13B110.3
O1—C8—C14115.71 (17)C12—C13—H13B110.3
C13—C9—C4120.2 (2)H13A—C13—H13B108.6
C13—C9—C10B109.4 (2)C15—C14—C19118.79 (19)
C4—C9—C10B123.1 (3)C15—C14—C8121.27 (18)
C13—C9—C10A98.0 (3)C19—C14—C8119.93 (18)
C4—C9—C10A112.9 (2)C16—C15—C14120.7 (2)
C13—C9—H9A108.3C16—C15—H15119.6
C4—C9—H9A108.3C14—C15—H15119.6
C10B—C9—H9A78.6C17—C16—C15118.6 (2)
C10A—C9—H9A108.3C17—C16—H16120.7
C13—C9—H9B99.1C15—C16—H16120.7
C4—C9—H9B99.1F1—C17—C16118.3 (2)
C10B—C9—H9B99.1F1—C17—C18118.61 (18)
C10A—C9—H9B128.7C16—C17—C18123.1 (2)
C11—C10A—C9104.7 (2)C17—C18—C19117.9 (2)
C11—C10A—H10A110.8C17—C18—H18121.1
C9—C10A—H10A110.8C19—C18—H18121.1
C11—C10A—H10B110.8C18—C19—C14120.9 (2)
C9—C10A—H10B110.8C18—C19—H19119.5
H10A—C10A—H10B108.9C14—C19—H19119.5
C9—C10B—C11104.8 (2)S1—C20—H20A109.5
C9—C10B—H10C110.8S1—C20—H20B109.5
C11—C10B—H10C110.8H20A—C20—H20B109.5
C9—C10B—H10D110.8S1—C20—H20C109.5
C11—C10B—H10D110.8H20A—C20—H20C109.5
H10C—C10B—H10D108.9H20B—C20—H20C109.5
C12—C11—C10B107.6 (3)
O2—S1—C1—C8141.47 (18)C5—C4—C9—C10A111.4 (3)
C20—S1—C1—C8−109.11 (19)C3—C4—C9—C10A−68.1 (4)
O2—S1—C1—C2−26.3 (2)C13—C9—C10A—C1145.6 (4)
C20—S1—C1—C283.13 (19)C4—C9—C10A—C11173.3 (3)
C8—C1—C2—C3−176.1 (2)C10B—C9—C10A—C11−69.7 (3)
S1—C1—C2—C3−6.5 (4)C13—C9—C10B—C11−1.6 (8)
C8—C1—C2—C70.1 (2)C4—C9—C10B—C11148.3 (4)
S1—C1—C2—C7169.66 (15)C10A—C9—C10B—C1169.9 (3)
C7—C2—C3—C4−0.2 (3)C9—C10B—C11—C1216.7 (8)
C1—C2—C3—C4175.5 (2)C9—C10B—C11—C10A−70.0 (3)
C2—C3—C4—C5−0.3 (4)C9—C10A—C11—C12−32.1 (4)
C2—C3—C4—C9179.3 (2)C9—C10A—C11—C10B69.6 (3)
C3—C4—C5—C60.8 (4)C10B—C11—C12—C13−25.0 (6)
C9—C4—C5—C6−178.8 (2)C10A—C11—C12—C135.7 (4)
C4—C5—C6—C7−0.7 (4)C4—C9—C13—C12−164.7 (3)
C8—O1—C7—C6176.1 (2)C10B—C9—C13—C12−13.9 (6)
C8—O1—C7—C2−1.3 (2)C10A—C9—C13—C12−42.3 (4)
C5—C6—C7—O1−176.9 (2)C11—C12—C13—C923.9 (4)
C5—C6—C7—C20.2 (3)C1—C8—C14—C1528.6 (3)
C3—C2—C7—O1177.75 (19)O1—C8—C14—C15−154.06 (19)
C1—C2—C7—O10.8 (2)C1—C8—C14—C19−150.1 (2)
C3—C2—C7—C60.3 (3)O1—C8—C14—C1927.3 (3)
C1—C2—C7—C6−176.7 (2)C19—C14—C15—C161.3 (3)
C2—C1—C8—O1−0.9 (2)C8—C14—C15—C16−177.3 (2)
S1—C1—C8—O1−170.58 (14)C14—C15—C16—C17−1.2 (3)
C2—C1—C8—C14176.6 (2)C15—C16—C17—F1−179.84 (19)
S1—C1—C8—C146.9 (3)C15—C16—C17—C180.4 (4)
C7—O1—C8—C11.4 (2)F1—C17—C18—C19−179.4 (2)
C7—O1—C8—C14−176.61 (17)C16—C17—C18—C190.4 (3)
C5—C4—C9—C13−133.7 (3)C17—C18—C19—C14−0.3 (3)
C3—C4—C9—C1346.8 (4)C15—C14—C19—C18−0.5 (3)
C5—C4—C9—C10B79.6 (6)C8—C14—C19—C18178.1 (2)
C3—C4—C9—C10B−100.0 (6)
Cg is the centroid of the C1/C2/C7/O/C8 furan ring.
D—H···AD—HH···AD···AD—H···A
C20—H20B···O2i0.982.293.262 (3)169.
C16—H16···Cgi0.952.533.365 (3)146.
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C1/C2/C7/O/C8 furan ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C20—H20B⋯O2i0.982.293.262 (3)169
C16—H16⋯Cgi0.952.533.365 (3)146

Symmetry code: (i) .

  8 in total

1.  Benzofurans and another constituent from seeds of Styrax officinalis.

Authors:  Yurdanur Yayla Akgul; Huseyin Anil
Journal:  Phytochemistry       Date:  2003-08       Impact factor: 4.072

2.  A new structural alternative in benzo[b]furans for antimicrobial activity.

Authors:  M Wahab Khan; M Jahangir Alam; M A Rashid; R Chowdhury
Journal:  Bioorg Med Chem       Date:  2005-08-15       Impact factor: 3.641

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Artoindonesianins X and Y, two isoprenylated 2-arylbenzofurans, from Artocarpus fretessi (Moraceae).

Authors:  Nunuk H Soekamto; Sjamsul A Achmad; Emilio L Ghisalberti; Euis H Hakim; Yana M Syah
Journal:  Phytochemistry       Date:  2003-10       Impact factor: 4.072

5.  2-(4-Fluoro-phen-yl)-3-methyl-sulfinyl-5-phenyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-24

6.  Synthesis of potent antitumor and antiviral benzofuran derivatives.

Authors:  Shadia A Galal; Amira S Abd El-All; Mohamed M Abdallah; Hoda I El-Diwani
Journal:  Bioorg Med Chem Lett       Date:  2009-03-21       Impact factor: 2.823

7.  Antibacterial and antifungal activity of cicerfuran and related 2-arylbenzofurans and stilbenes.

Authors:  Shazia N Aslam; Philip C Stevenson; Tetsuo Kokubun; David R Hall
Journal:  Microbiol Res       Date:  2007-04-05       Impact factor: 5.415

8.  5-Cyclo-hexyl-2-(4-fluoro-phen-yl)-3-methyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-22
  8 in total
  3 in total

1.  5-Cyclo-pentyl-2-(3-fluoro-phen-yl)-3-methyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13

2.  5-Cyclo-pentyl-2-(4-fluoro-phen-yl)-3-isopropyl-sulfonyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-10

3.  5-Cyclo-pentyl-2-(4-methyl-phen-yl)-3-methyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-13
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.