Literature DB >> 22807854

5-Cyclo-pentyl-2-(3-fluoro-phen-yl)-3-methyl-sulfinyl-1-benzofuran.

Hong Dae Choi, Pil Ja Seo, Uk Lee.   

Abstract

In the title compound, C(20)H(19)FO(2)S, the benzofuran fragment is essentially planar, with a largest deviation from the mean plane of 0.026 (2) Å. The benzene ring makes a dihedral angle of 30.72 (12)° with this plane. The cyclo-pentyl group adopts an envelope conformation, with the α-C atom as the flap. This atom is disordered over two sites with occupancy factors of 0.803 (16) and 0.197 (16). In the crystal, mol-ecules are linked by weak C-H⋯O, C-H⋯π and C-F⋯π [3.257 (3) Å] inter-actions.

Entities:  

Year:  2012        PMID: 22807854      PMCID: PMC3393297          DOI: 10.1107/S1600536812025482

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of related compounds, see: Choi et al. (2011 ▶); Seo et al. (2011 ▶).

Experimental

Crystal data

C20H19FO2S M = 342.41 Monoclinic, a = 6.1024 (3) Å b = 25.3030 (11) Å c = 10.6840 (5) Å β = 90.231 (1)° V = 1649.69 (13) Å3 Z = 4 Mo Kα radiation μ = 0.22 mm−1 T = 173 K 0.40 × 0.25 × 0.22 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.919, T max = 0.954 13224 measured reflections 2905 independent reflections 2568 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.165 S = 1.02 2905 reflections 228 parameters 30 restraints H-atom parameters constrained Δρmax = 1.35 e Å−3 Δρmin = −0.55 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812025482/yk2058sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812025482/yk2058Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812025482/yk2058Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H19FO2SF(000) = 720
Mr = 342.41Dx = 1.379 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5280 reflections
a = 6.1024 (3) Åθ = 2.5–28.2°
b = 25.3030 (11) ŵ = 0.22 mm1
c = 10.6840 (5) ÅT = 173 K
β = 90.231 (1)°Block, colourless
V = 1649.69 (13) Å30.40 × 0.25 × 0.22 mm
Z = 4
Bruker SMART APEXII CCD diffractometer2905 independent reflections
Radiation source: rotating anode2568 reflections with I > 2σ(I)
Graphite multilayer monochromatorRint = 0.027
Detector resolution: 10.0 pixels mm-1θmax = 25.0°, θmin = 2.1°
φ and ω scansh = −7→7
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −30→30
Tmin = 0.919, Tmax = 0.954l = −12→12
13224 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: difference Fourier map
wR(F2) = 0.165H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.087P)2 + 2.8614P] where P = (Fo2 + 2Fc2)/3
2905 reflections(Δ/σ)max < 0.001
228 parametersΔρmax = 1.35 e Å3
30 restraintsΔρmin = −0.55 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.49517 (11)0.72428 (3)0.41704 (6)0.0274 (2)
O10.5749 (3)0.56958 (7)0.45210 (17)0.0261 (4)
O20.4494 (4)0.74049 (8)0.28532 (19)0.0403 (6)
F11.2882 (3)0.56555 (10)0.6805 (2)0.0617 (6)
C10.3984 (4)0.57030 (11)0.3714 (2)0.0245 (6)
C20.6189 (4)0.62149 (11)0.4815 (2)0.0242 (6)
C30.4786 (4)0.65466 (11)0.4202 (2)0.0234 (6)
C40.1509 (5)0.63050 (11)0.2681 (3)0.0289 (6)
H40.10490.66540.24880.035*
C50.0407 (5)0.58719 (12)0.2184 (3)0.0344 (7)
C60.1179 (5)0.53590 (12)0.2453 (3)0.0356 (7)
H60.04290.50660.20960.043*
C70.2976 (5)0.52630 (11)0.3211 (3)0.0306 (6)
H70.34860.49150.33760.037*
C80.3310 (4)0.62182 (10)0.3474 (2)0.0233 (6)
C9−0.1701 (6)0.59386 (12)0.1427 (3)0.0448 (8)
H9A−0.29440.58370.19840.054*0.803 (16)
H9B−0.27530.59440.21420.054*0.197 (16)
C10A−0.1826 (10)0.5586 (2)0.0271 (5)0.0527 (19)0.803 (16)
H10A−0.20530.52120.05050.063*0.803 (16)
H10B−0.04760.5615−0.02360.063*0.803 (16)
C10B−0.283 (3)0.5505 (2)0.0671 (11)0.035 (3)0.197 (16)
H10C−0.39890.53300.11670.043*0.197 (16)
H10D−0.17630.52360.03900.043*0.197 (16)
C11−0.3803 (8)0.58042 (15)−0.0439 (5)0.0776 (16)
H11A−0.35410.5794−0.13520.093*0.803 (16)
H11B−0.51270.5593−0.02520.093*0.803 (16)
H11C−0.28660.5788−0.11920.093*0.197 (16)
H11D−0.52340.5637−0.06280.093*0.197 (16)
C12−0.4100 (5)0.63712 (13)0.0002 (3)0.0377 (7)
H12A−0.55260.64150.04280.045*
H12B−0.40340.6619−0.07130.045*
C13−0.2206 (5)0.64710 (12)0.0912 (3)0.0377 (7)
H13A−0.09230.66200.04720.045*
H13B−0.26490.67170.15860.045*
C140.7931 (4)0.62945 (11)0.5734 (2)0.0258 (6)
C150.9653 (4)0.59298 (12)0.5813 (3)0.0297 (6)
H150.97180.56350.52630.036*
C161.1247 (5)0.60094 (13)0.6706 (3)0.0341 (7)
C171.1235 (5)0.64302 (14)0.7524 (3)0.0390 (8)
H171.23690.64740.81260.047*
C180.9526 (5)0.67855 (13)0.7442 (3)0.0380 (7)
H180.94850.70790.79950.046*
C190.7870 (5)0.67197 (12)0.6566 (3)0.0304 (6)
H190.66900.69640.65300.036*
C200.2521 (5)0.73842 (12)0.5038 (3)0.0339 (7)
H20A0.22130.77640.49980.051*
H20B0.27330.72790.59130.051*
H20C0.12860.71880.46790.051*
U11U22U33U12U13U23
S10.0324 (4)0.0216 (4)0.0281 (4)−0.0040 (3)−0.0031 (3)0.0021 (2)
O10.0283 (10)0.0232 (9)0.0266 (10)0.0024 (7)−0.0057 (8)0.0012 (7)
O20.0606 (15)0.0312 (11)0.0290 (11)−0.0028 (10)0.0000 (10)0.0099 (9)
F10.0414 (12)0.0772 (16)0.0665 (15)0.0171 (11)−0.0087 (10)0.0048 (12)
C10.0263 (13)0.0261 (14)0.0210 (13)0.0024 (11)−0.0039 (10)0.0022 (10)
C20.0254 (13)0.0252 (13)0.0219 (13)−0.0018 (10)0.0016 (10)−0.0007 (10)
C30.0270 (13)0.0226 (13)0.0205 (13)−0.0010 (10)−0.0019 (10)0.0010 (10)
C40.0356 (15)0.0229 (14)0.0280 (14)0.0018 (11)−0.0092 (12)0.0030 (11)
C50.0420 (17)0.0282 (15)0.0330 (16)−0.0005 (13)−0.0125 (13)0.0015 (12)
C60.0451 (18)0.0238 (14)0.0379 (17)−0.0038 (12)−0.0144 (14)−0.0035 (12)
C70.0387 (16)0.0218 (14)0.0313 (15)0.0026 (12)−0.0070 (12)0.0010 (11)
C80.0263 (13)0.0225 (13)0.0210 (13)−0.0002 (10)−0.0008 (10)0.0008 (10)
C90.0461 (19)0.0373 (18)0.0509 (18)−0.0018 (15)−0.0180 (15)0.0010 (14)
C10A0.050 (3)0.033 (2)0.075 (3)0.006 (2)−0.039 (3)−0.014 (2)
C10B0.022 (7)0.034 (6)0.050 (6)−0.006 (5)0.009 (5)−0.004 (4)
C110.084 (3)0.041 (2)0.107 (3)0.016 (2)−0.072 (3)−0.018 (2)
C120.0324 (16)0.0392 (17)0.0416 (17)0.0035 (13)−0.0108 (13)−0.0001 (14)
C130.0411 (17)0.0322 (16)0.0398 (17)0.0042 (13)−0.0130 (14)−0.0041 (13)
C140.0231 (13)0.0308 (14)0.0236 (13)−0.0023 (11)−0.0011 (10)0.0047 (11)
C150.0269 (14)0.0348 (16)0.0276 (14)−0.0008 (12)−0.0003 (11)0.0019 (12)
C160.0223 (14)0.0446 (18)0.0354 (16)0.0027 (12)−0.0020 (12)0.0099 (13)
C170.0310 (16)0.055 (2)0.0313 (16)−0.0076 (14)−0.0098 (12)0.0031 (14)
C180.0391 (17)0.0437 (18)0.0311 (16)−0.0048 (14)−0.0067 (13)−0.0056 (13)
C190.0298 (15)0.0341 (15)0.0274 (14)−0.0005 (12)−0.0022 (11)−0.0008 (12)
C200.0394 (17)0.0291 (15)0.0332 (16)0.0042 (13)0.0000 (13)−0.0008 (12)
S1—O21.491 (2)C10B—C111.5254 (17)
S1—C31.765 (3)C10B—H10C0.9900
S1—C201.789 (3)C10B—H10D0.9900
O1—C21.377 (3)C11—C121.521 (5)
O1—C11.377 (3)C11—H11A0.9900
F1—C161.345 (4)C11—H11B0.9900
C1—C71.380 (4)C11—H11C0.9900
C1—C81.390 (4)C11—H11D0.9900
C2—C31.364 (4)C12—C131.528 (4)
C2—C141.458 (4)C12—H12A0.9900
C3—C81.449 (4)C12—H12B0.9900
C4—C51.390 (4)C13—H13A0.9900
C4—C81.402 (4)C13—H13B0.9900
C4—H40.9500C14—C191.396 (4)
C5—C61.410 (4)C14—C151.401 (4)
C5—C91.526 (4)C15—C161.375 (4)
C6—C71.383 (4)C15—H150.9500
C6—H60.9500C16—C171.377 (5)
C7—H70.9500C17—C181.379 (5)
C9—C131.487 (4)C17—H170.9500
C9—C10A1.5249 (16)C18—C191.386 (4)
C9—C10B1.5250 (17)C18—H180.9500
C9—H9A1.0000C19—H190.9500
C9—H9B1.0000C20—H20A0.9800
C10A—C111.5254 (17)C20—H20B0.9800
C10A—H10A0.9900C20—H20C0.9800
C10A—H10B0.9900
O2—S1—C3106.38 (12)C12—C11—C10A106.4 (3)
O2—S1—C20106.37 (14)C12—C11—H11A110.5
C3—S1—C2098.18 (13)C10B—C11—H11A133.6
C2—O1—C1106.34 (19)C10A—C11—H11A110.5
O1—C1—C7125.4 (2)C12—C11—H11B110.5
O1—C1—C8111.0 (2)C10B—C11—H11B83.8
C7—C1—C8123.6 (2)C10A—C11—H11B110.5
C3—C2—O1110.9 (2)H11A—C11—H11B108.6
C3—C2—C14133.8 (3)C12—C11—H11C111.1
O1—C2—C14115.2 (2)C10B—C11—H11C112.7
C2—C3—C8107.0 (2)C10A—C11—H11C86.0
C2—C3—S1126.0 (2)H11B—C11—H11C128.0
C8—C3—S1126.7 (2)C12—C11—H11D111.1
C5—C4—C8119.0 (3)C10B—C11—H11D106.7
C5—C4—H4120.5C10A—C11—H11D130.0
C8—C4—H4120.5H11A—C11—H11D86.2
C4—C5—C6119.2 (3)H11C—C11—H11D109.2
C4—C5—C9121.4 (3)C11—C12—C13105.2 (2)
C6—C5—C9119.3 (3)C11—C12—H12A110.7
C7—C6—C5123.0 (3)C13—C12—H12A110.7
C7—C6—H6118.5C11—C12—H12B110.7
C5—C6—H6118.5C13—C12—H12B110.7
C1—C7—C6116.0 (3)H12A—C12—H12B108.8
C1—C7—H7122.0C9—C13—C12103.9 (2)
C6—C7—H7122.0C9—C13—H13A111.0
C1—C8—C4119.3 (2)C12—C13—H13A111.0
C1—C8—C3104.8 (2)C9—C13—H13B111.0
C4—C8—C3135.9 (2)C12—C13—H13B111.0
C13—C9—C5118.0 (3)H13A—C13—H13B109.0
C13—C9—C10A102.7 (3)C19—C14—C15119.4 (3)
C5—C9—C10A113.8 (3)C19—C14—C2120.9 (2)
C13—C9—C10B111.3 (3)C15—C14—C2119.6 (3)
C5—C9—C10B125.4 (5)C16—C15—C14118.3 (3)
C13—C9—H9A107.2C16—C15—H15120.9
C5—C9—H9A107.2C14—C15—H15120.9
C10A—C9—H9A107.2F1—C16—C15118.7 (3)
C10B—C9—H9A77.8F1—C16—C17118.1 (3)
C13—C9—H9B97.9C15—C16—C17123.2 (3)
C5—C9—H9B98.0C16—C17—C18118.1 (3)
C10A—C9—H9B126.7C16—C17—H17121.0
C10B—C9—H9B97.2C18—C17—H17121.0
C9—C10A—C11103.2 (3)C17—C18—C19120.9 (3)
C9—C10A—H10A111.1C17—C18—H18119.5
C11—C10A—H10A111.1C19—C18—H18119.5
C9—C10A—H10B111.1C18—C19—C14120.1 (3)
C11—C10A—H10B111.1C18—C19—H19119.9
H10A—C10A—H10B109.1C14—C19—H19119.9
C9—C10B—C11103.2 (3)S1—C20—H20A109.5
C9—C10B—H10C111.1S1—C20—H20B109.5
C11—C10B—H10C111.1H20A—C20—H20B109.5
C9—C10B—H10D111.1S1—C20—H20C109.5
C11—C10B—H10D111.1H20A—C20—H20C109.5
H10C—C10B—H10D109.1H20B—C20—H20C109.5
C12—C11—C10B105.9 (5)
C2—O1—C1—C7−178.4 (3)C4—C5—C9—C10B169.7 (9)
C2—O1—C1—C80.9 (3)C6—C5—C9—C10B−14.5 (10)
C1—O1—C2—C3−1.1 (3)C13—C9—C10A—C11−40.4 (6)
C1—O1—C2—C14176.1 (2)C5—C9—C10A—C11−169.1 (4)
O1—C2—C3—C80.9 (3)C10B—C9—C10A—C1170.6 (5)
C14—C2—C3—C8−175.6 (3)C13—C9—C10B—C117.3 (14)
O1—C2—C3—S1−172.60 (18)C5—C9—C10B—C11−146.2 (7)
C14—C2—C3—S110.9 (4)C10A—C9—C10B—C11−70.6 (5)
O2—S1—C3—C2137.4 (2)C9—C10B—C11—C12−24.6 (13)
C20—S1—C3—C2−112.8 (3)C9—C10B—C11—C10A70.6 (5)
O2—S1—C3—C8−34.9 (3)C9—C10A—C11—C1222.9 (7)
C20—S1—C3—C874.9 (3)C9—C10A—C11—C10B−70.6 (5)
C8—C4—C5—C6−2.3 (4)C10B—C11—C12—C1333.3 (9)
C8—C4—C5—C9173.6 (3)C10A—C11—C12—C132.6 (6)
C4—C5—C6—C71.1 (5)C5—C9—C13—C12168.4 (3)
C9—C5—C6—C7−174.9 (3)C10A—C9—C13—C1242.3 (4)
O1—C1—C7—C6177.9 (3)C10B—C9—C13—C1212.7 (9)
C8—C1—C7—C6−1.3 (4)C11—C12—C13—C9−27.9 (4)
C5—C6—C7—C10.7 (5)C3—C2—C14—C1928.7 (5)
O1—C1—C8—C4−179.2 (2)O1—C2—C14—C19−147.7 (3)
C7—C1—C8—C40.1 (4)C3—C2—C14—C15−153.4 (3)
O1—C1—C8—C3−0.3 (3)O1—C2—C14—C1530.2 (3)
C7—C1—C8—C3179.0 (3)C19—C14—C15—C16−0.7 (4)
C5—C4—C8—C11.7 (4)C2—C14—C15—C16−178.7 (3)
C5—C4—C8—C3−176.7 (3)C14—C15—C16—F1178.7 (3)
C2—C3—C8—C1−0.4 (3)C14—C15—C16—C17−0.2 (4)
S1—C3—C8—C1173.1 (2)F1—C16—C17—C18−178.4 (3)
C2—C3—C8—C4178.2 (3)C15—C16—C17—C180.5 (5)
S1—C3—C8—C4−8.3 (5)C16—C17—C18—C190.2 (5)
C4—C5—C9—C1317.8 (5)C17—C18—C19—C14−1.1 (5)
C6—C5—C9—C13−166.4 (3)C15—C14—C19—C181.4 (4)
C4—C5—C9—C10A138.2 (5)C2—C14—C19—C18179.2 (3)
C6—C5—C9—C10A−45.9 (5)
D—H···AD—HH···AD···AD—H···A
C19—H19···O2i0.952.523.326 (4)143
C20—H20B···O2i0.982.473.279 (4)140
C9—H9A···Cg1ii1.002.763.626 (4)145
C15—H15···Cg2iii0.952.943.461 (4)116
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C1–C3/C8/O1 furan ring and the C2–C7 benzene ring, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
C19—H19⋯O2i 0.952.523.326 (4)143
C20—H20B⋯O2i 0.982.473.279 (4)140
C9—H9ACg1ii 1.002.763.626 (4)145
C15—H15⋯Cg2iii 0.952.943.461 (4)116

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  5-Cyclo-pentyl-3-methyl-sulfinyl-2-phenyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-31

3.  5-Cyclo-pentyl-2-(4-fluoro-phen-yl)-3-methyl-sulfinyl-1-benzofuran.

Authors:  Pil Ja Seo; Hong Dae Choi; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-14
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.