Literature DB >> 21579209

2-(4-Fluoro-phen-yl)-3-methyl-sulfinyl-5-phenyl-1-benzofuran.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

In the title mol-ecule, C(21)H(15)FO(2)S, the O atom and the methyl group of the methyl-sulfinyl substituent are situated on the opposite sides of the plane through the benzofuran fragment. The benzofuran ring plane makes dihedral angles of 28.63 (6) and 31.55 (5)° with the 4-fluoro-phenyl and phenyl rings, respectively. Weak C-H⋯F and C-H⋯O hydrogen bonds and inter-molecular C-H⋯π inter-actions are present in the crystal structure. The title crystal was refined as an inversion twin with a 0.39 (7):0.61 (7) domain ratio.

Entities:  

Year:  2010        PMID: 21579209      PMCID: PMC2979132          DOI: 10.1107/S1600536810014613

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar 3-alkyl­sulfanyl-2-(4-fluoro­phen­yl)-5-phenyl-1-benzofuran derivatives, see: Choi et al. (2009 ▶, 2010 ▶). For the pharmacological activity of benzofuran compounds, see: Aslam et al. (2006 ▶); Galal et al. (2009 ▶); Khan et al. (2005 ▶). For natural products with benzofuran rings, see: Akgul & Anil (2003 ▶); Soekamto et al. (2003 ▶). For hydrogen bonding, see: Desiraju & Steiner (1999 ▶).

Experimental

Crystal data

C21H15FO2S M = 350.39 Monoclinic, a = 10.148 (2) Å b = 7.117 (1) Å c = 11.991 (2) Å β = 110.047 (2)° V = 813.6 (2) Å3 Z = 2 Mo Kα radiation μ = 0.22 mm−1 T = 173 K 0.40 × 0.40 × 0.25 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.917, T max = 0.947 4812 measured reflections 3226 independent reflections 3065 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.086 S = 1.06 3226 reflections 228 parameters 1 restraint H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.21 e Å−3 Absolute structure: Flack (1983 ▶), 1308 Friedel pairs Flack parameter: 0.39 (7) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810014613/fb2185sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810014613/fb2185Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H15FO2SF(000) = 364
Mr = 350.39Dx = 1.430 Mg m3
Monoclinic, P21Melting point = 506–507 K
Hall symbol: P 2ybMo Kα radiation, λ = 0.71073 Å
a = 10.148 (2) ÅCell parameters from 3710 reflections
b = 7.117 (1) Åθ = 2.3–28.3°
c = 11.991 (2) ŵ = 0.22 mm1
β = 110.047 (2)°T = 173 K
V = 813.6 (2) Å3Block, colourless
Z = 20.40 × 0.40 × 0.25 mm
Bruker SMART APEXII CCD diffractometer3226 independent reflections
Radiation source: rotating anode3065 reflections with I > 2σ(I)
graphite multilayerRint = 0.019
Detector resolution: 10.0 pixels mm-1θmax = 27.0°, θmin = 1.8°
φ and ω scansh = −8→12
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −9→8
Tmin = 0.917, Tmax = 0.947l = −15→14
4812 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032H-atom parameters constrained
wR(F2) = 0.086w = 1/[σ2(Fo2) + (0.0516P)2 + 0.1094P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
3226 reflectionsΔρmax = 0.31 e Å3
228 parametersΔρmin = −0.21 e Å3
1 restraintAbsolute structure: Flack (1983), 1308 Friedel pairs
59 constraintsFlack parameter: 0.39 (7)
Primary atom site location: structure-invariant direct methods
Experimental. The measured sample has been cut from the larger crystal. The crystals, both the grown ones as well as the cut one, have not been examined under the polarization microscope.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. The diffractions 1 0 0 and 0 0 1 as well as their equivalents have been excluded from the refinement because their respective intensities significantly differed from the calculated ones.
xyzUiso*/Ueq
S0.55747 (5)0.51643 (8)0.86742 (4)0.03009 (13)
F1.26845 (12)0.4440 (2)1.03910 (11)0.0425 (3)
O10.70363 (13)0.4548 (2)0.60162 (10)0.0280 (3)
O20.44274 (15)0.6590 (2)0.83904 (13)0.0398 (4)
C10.59124 (17)0.4753 (3)0.73449 (15)0.0251 (4)
C20.48587 (19)0.4671 (3)0.61728 (15)0.0257 (4)
C30.33954 (18)0.4703 (3)0.57251 (15)0.0256 (4)
H30.28830.48100.62340.031*
C40.27128 (18)0.4572 (3)0.44981 (15)0.0255 (4)
C50.35234 (19)0.4441 (3)0.37470 (16)0.0286 (4)
H50.30610.43520.29320.034*
C60.4975 (2)0.4439 (3)0.41758 (16)0.0317 (4)
H60.54950.43660.36720.038*
C70.56102 (19)0.4553 (3)0.53979 (16)0.0264 (4)
C80.71883 (19)0.4670 (3)0.72036 (15)0.0255 (4)
C90.86341 (18)0.4633 (3)0.80353 (15)0.0242 (4)
C100.97478 (18)0.5278 (3)0.76948 (16)0.0278 (4)
H100.95660.57450.69320.033*
C111.11179 (18)0.5224 (3)0.84845 (17)0.0317 (4)
H111.18570.56630.82650.038*
C121.13528 (19)0.4503 (3)0.96030 (17)0.0291 (4)
C131.0289 (2)0.3813 (3)0.99652 (17)0.0288 (4)
H131.04840.33141.07220.035*
C140.89299 (19)0.3886 (3)0.91741 (16)0.0268 (4)
H140.82010.34320.94020.032*
C150.11547 (19)0.4540 (3)0.39950 (15)0.0250 (4)
C160.0356 (2)0.3732 (3)0.46221 (16)0.0281 (4)
H160.08060.32310.53730.034*
C17−0.1097 (2)0.3669 (3)0.41369 (17)0.0313 (4)
H17−0.16100.31390.45680.038*
C18−0.1788 (2)0.4392 (3)0.30148 (18)0.0323 (4)
H18−0.27600.43260.26860.039*
C19−0.10197 (19)0.5216 (3)0.23840 (16)0.0315 (4)
H19−0.14780.57180.16350.038*
C200.04378 (18)0.5288 (3)0.28756 (15)0.0277 (4)
H200.09440.58480.24480.033*
C210.4775 (2)0.2943 (4)0.8756 (2)0.0421 (6)
H21A0.44900.29250.94410.063*
H21B0.54380.19520.88170.063*
H21C0.39700.27650.80530.063*
U11U22U33U12U13U23
S0.0302 (2)0.0398 (3)0.02136 (19)0.0062 (2)0.01031 (15)−0.0019 (2)
F0.0287 (6)0.0505 (8)0.0447 (7)−0.0009 (6)0.0080 (5)0.0011 (6)
O10.0297 (7)0.0328 (7)0.0243 (6)0.0016 (6)0.0128 (5)0.0010 (6)
O20.0390 (8)0.0470 (10)0.0350 (8)0.0117 (7)0.0148 (7)−0.0033 (7)
C10.0285 (9)0.0257 (11)0.0232 (8)0.0025 (7)0.0116 (7)−0.0012 (7)
C20.0336 (9)0.0226 (10)0.0228 (8)0.0019 (7)0.0120 (7)0.0007 (7)
C30.0306 (9)0.0244 (11)0.0253 (8)0.0003 (7)0.0142 (7)−0.0004 (7)
C40.0306 (9)0.0213 (9)0.0250 (8)−0.0008 (8)0.0100 (7)0.0015 (8)
C50.0361 (10)0.0289 (10)0.0224 (8)−0.0012 (8)0.0122 (7)−0.0009 (8)
C60.0364 (10)0.0369 (11)0.0269 (9)0.0023 (9)0.0173 (8)0.0011 (9)
C70.0292 (9)0.0247 (9)0.0285 (9)0.0011 (8)0.0140 (7)0.0003 (8)
C80.0322 (9)0.0220 (10)0.0253 (8)0.0005 (7)0.0135 (7)0.0017 (7)
C90.0264 (9)0.0198 (9)0.0289 (8)0.0020 (7)0.0129 (7)−0.0005 (8)
C100.0346 (9)0.0241 (9)0.0304 (8)0.0022 (9)0.0184 (7)0.0027 (9)
C110.0311 (9)0.0265 (10)0.0439 (10)−0.0006 (9)0.0211 (8)−0.0002 (10)
C120.0249 (9)0.0264 (10)0.0354 (9)0.0025 (8)0.0094 (7)−0.0021 (9)
C130.0337 (11)0.0249 (10)0.0289 (9)0.0027 (8)0.0121 (8)0.0015 (8)
C140.0292 (10)0.0242 (10)0.0310 (9)0.0007 (7)0.0154 (8)0.0016 (8)
C150.0330 (9)0.0196 (9)0.0237 (8)−0.0035 (8)0.0114 (7)−0.0042 (8)
C160.0374 (11)0.0254 (10)0.0234 (8)−0.0021 (8)0.0126 (8)−0.0002 (8)
C170.0352 (10)0.0285 (11)0.0351 (10)−0.0046 (8)0.0183 (8)−0.0027 (9)
C180.0265 (9)0.0319 (11)0.0385 (10)−0.0017 (8)0.0108 (8)−0.0040 (9)
C190.0358 (9)0.0270 (10)0.0288 (8)0.0016 (9)0.0073 (7)0.0011 (9)
C200.0342 (9)0.0234 (9)0.0273 (8)−0.0040 (9)0.0130 (7)0.0017 (9)
C210.0451 (13)0.0481 (15)0.0405 (12)0.0055 (11)0.0242 (10)0.0131 (11)
S—O21.4931 (16)C10—H100.9300
S—C11.7660 (17)C11—C121.379 (3)
S—C211.795 (2)C11—H110.9300
F—C121.359 (2)C12—C131.385 (3)
O1—C81.381 (2)C13—C141.381 (3)
O1—C71.382 (2)C13—H130.9300
C1—C81.364 (2)C14—H140.9300
C1—C21.446 (2)C15—C201.395 (3)
C2—C71.392 (2)C15—C161.404 (3)
C2—C31.395 (2)C16—C171.388 (3)
C3—C41.398 (2)C16—H160.9300
C3—H30.9300C17—C181.386 (3)
C4—C51.416 (2)C17—H170.9300
C4—C151.487 (2)C18—C191.388 (3)
C5—C61.383 (3)C18—H180.9300
C5—H50.9300C19—C201.393 (2)
C6—C71.386 (3)C19—H190.9300
C6—H60.9300C20—H200.9300
C8—C91.464 (2)C21—H21A0.9600
C9—C141.399 (2)C21—H21B0.9600
C9—C101.404 (2)C21—H21C0.9600
C10—C111.389 (2)
O2—S—C1106.52 (9)C12—C11—H11120.9
O2—S—C21106.22 (10)C10—C11—H11120.9
C1—S—C2197.72 (10)F—C12—C11119.20 (16)
C8—O1—C7106.22 (13)F—C12—C13117.85 (18)
C8—C1—C2107.14 (15)C11—C12—C13122.95 (18)
C8—C1—S127.27 (14)C14—C13—C12118.27 (18)
C2—C1—S125.19 (13)C14—C13—H13120.9
C7—C2—C3119.90 (16)C12—C13—H13120.9
C7—C2—C1105.03 (15)C13—C14—C9120.97 (17)
C3—C2—C1135.07 (16)C13—C14—H14119.5
C2—C3—C4118.80 (15)C9—C14—H14119.5
C2—C3—H3120.6C20—C15—C16117.73 (17)
C4—C3—H3120.6C20—C15—C4121.06 (15)
C3—C4—C5119.18 (16)C16—C15—C4121.20 (16)
C3—C4—C15120.16 (15)C17—C16—C15120.94 (18)
C5—C4—C15120.66 (16)C17—C16—H16119.5
C6—C5—C4122.70 (17)C15—C16—H16119.5
C6—C5—H5118.7C18—C17—C16120.43 (18)
C4—C5—H5118.7C18—C17—H17119.8
C5—C6—C7116.31 (16)C16—C17—H17119.8
C5—C6—H6121.8C17—C18—C19119.61 (18)
C7—C6—H6121.8C17—C18—H18120.2
O1—C7—C6126.11 (16)C19—C18—H18120.2
O1—C7—C2110.78 (15)C18—C19—C20119.88 (17)
C6—C7—C2123.10 (17)C18—C19—H19120.1
C1—C8—O1110.83 (15)C20—C19—H19120.1
C1—C8—C9133.51 (16)C19—C20—C15121.40 (17)
O1—C8—C9115.64 (14)C19—C20—H20119.3
C14—C9—C10118.91 (16)C15—C20—H20119.3
C14—C9—C8120.10 (15)S—C21—H21A109.5
C10—C9—C8120.96 (16)S—C21—H21B109.5
C11—C10—C9120.69 (17)H21A—C21—H21B109.5
C11—C10—H10119.7S—C21—H21C109.5
C9—C10—H10119.7H21A—C21—H21C109.5
C12—C11—C10118.19 (16)H21B—C21—H21C109.5
O2—S—C1—C8133.81 (19)C7—O1—C8—C9178.29 (16)
C21—S—C1—C8−116.67 (19)C1—C8—C9—C1427.8 (3)
O2—S—C1—C2−38.02 (19)O1—C8—C9—C14−150.11 (18)
C21—S—C1—C271.50 (18)C1—C8—C9—C10−154.5 (2)
C8—C1—C2—C7−0.3 (2)O1—C8—C9—C1027.6 (3)
S—C1—C2—C7172.91 (16)C14—C9—C10—C11−1.7 (3)
C8—C1—C2—C3−179.7 (2)C8—C9—C10—C11−179.48 (19)
S—C1—C2—C3−6.5 (3)C9—C10—C11—C120.7 (3)
C7—C2—C3—C41.4 (3)C10—C11—C12—F−179.86 (19)
C1—C2—C3—C4−179.3 (2)C10—C11—C12—C130.8 (3)
C2—C3—C4—C5−1.0 (3)F—C12—C13—C14179.42 (18)
C2—C3—C4—C15178.04 (17)C11—C12—C13—C14−1.2 (3)
C3—C4—C5—C6−0.1 (3)C12—C13—C14—C90.1 (3)
C15—C4—C5—C6−179.11 (19)C10—C9—C14—C131.3 (3)
C4—C5—C6—C70.7 (3)C8—C9—C14—C13179.05 (18)
C8—O1—C7—C6−179.6 (2)C3—C4—C15—C20149.0 (2)
C8—O1—C7—C2−0.1 (2)C5—C4—C15—C20−32.0 (3)
C5—C6—C7—O1179.1 (2)C3—C4—C15—C16−31.9 (3)
C5—C6—C7—C2−0.3 (3)C5—C4—C15—C16147.1 (2)
C3—C2—C7—O1179.75 (16)C20—C15—C16—C170.5 (3)
C1—C2—C7—O10.3 (2)C4—C15—C16—C17−178.57 (19)
C3—C2—C7—C6−0.8 (3)C15—C16—C17—C180.6 (3)
C1—C2—C7—C6179.71 (19)C16—C17—C18—C19−1.3 (3)
C2—C1—C8—O10.2 (2)C17—C18—C19—C200.8 (3)
S—C1—C8—O1−172.79 (14)C18—C19—C20—C150.3 (3)
C2—C1—C8—C9−177.7 (2)C16—C15—C20—C19−1.0 (3)
S—C1—C8—C99.2 (3)C4—C15—C20—C19178.14 (19)
C7—O1—C8—C1−0.1 (2)
Cg1 and Cg2 are the centroids of the C15–C20 (5-phenyl) and the C9–14 (4-fluorophenyl) rings, respectively.
D—H···AD—HH···AD···AD—H···A
C18—H18···O2i0.932.613.301 (3)131
C21—H21A···O2ii0.962.633.375 (3)135
C21—H21B···Fiii0.962.553.478 (3)164
C10—H10···Cg1iv0.932.863.450 (2)122
C13—H13···Cg2iii0.932.813.417 (2)124
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C15–C20 (5-phen­yl) and the C9–14 (4-fluoro­phen­yl) rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C18—H18⋯O2i0.932.613.301 (3)131
C21—H21A⋯O2ii0.962.633.375 (3)135
C21—H21B⋯Fiii0.962.553.478 (3)164
C10—H10⋯Cg1iv0.932.863.450 (2)122
C13—H13⋯Cg2iii0.932.813.417 (2)124

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  7 in total

1.  Benzofurans and another constituent from seeds of Styrax officinalis.

Authors:  Yurdanur Yayla Akgul; Huseyin Anil
Journal:  Phytochemistry       Date:  2003-08       Impact factor: 4.072

2.  A new structural alternative in benzo[b]furans for antimicrobial activity.

Authors:  M Wahab Khan; M Jahangir Alam; M A Rashid; R Chowdhury
Journal:  Bioorg Med Chem       Date:  2005-08-15       Impact factor: 3.641

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Artoindonesianins X and Y, two isoprenylated 2-arylbenzofurans, from Artocarpus fretessi (Moraceae).

Authors:  Nunuk H Soekamto; Sjamsul A Achmad; Emilio L Ghisalberti; Euis H Hakim; Yana M Syah
Journal:  Phytochemistry       Date:  2003-10       Impact factor: 4.072

5.  2-(4-Fluoro-phen-yl)-3-methyl-sulfanyl-5-phenyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-17

6.  3-Ethyl-sulfanyl-2-(4-fluoro-phen-yl)-5-phenyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-13

7.  Synthesis of potent antitumor and antiviral benzofuran derivatives.

Authors:  Shadia A Galal; Amira S Abd El-All; Mohamed M Abdallah; Hoda I El-Diwani
Journal:  Bioorg Med Chem Lett       Date:  2009-03-21       Impact factor: 2.823

  7 in total
  2 in total

1.  5-Cyclo-pentyl-2-(4-fluoro-phen-yl)-3-methyl-sulfinyl-1-benzofuran.

Authors:  Pil Ja Seo; Hong Dae Choi; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-14

2.  3-Ethyl-sulfinyl-2-(3-fluoro-phen-yl)-5-phenyl-1-benzo-furan.

Authors:  Hong Dae Choi; Pil Ja Seo; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-12
  2 in total

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