Literature DB >> 23284449

5-Cyclo-pentyl-2-(4-methyl-phen-yl)-3-methyl-sulfinyl-1-benzofuran.

Hong Dae Choi1, Pil Ja Seo, Uk Lee.   

Abstract

In the title compound, C(21)H(22)O(2)S, the cyclo-pentyl ring adopts an envelope conformation with the flap atom connected to the benzofuran residue. The benzofuran unit is essentially planar, with a mean deviation from the least-squares plane defined by the nine constituent ring atoms of 0.008 (2) Å. In the crystal, mol-ecules are linked via pairs of C-H⋯π inter-actions, forming inversion dimers. In the ring of the 4-methyl-phenyl group, four C atoms and their attached H atoms are disordered over two sets of sites, with site-ccupancy factors of 0.899 (5) and 0.10.

Entities:  

Year:  2012        PMID: 23284449      PMCID: PMC3515229          DOI: 10.1107/S1600536812042249

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information and the crystal structures of related compounds, see: Choi et al. (2011 ▶); Seo, et al. (2011 ▶).

Experimental

Crystal data

C21H22O2S M = 338.45 Monoclinic, a = 15.2869 (5) Å b = 7.2881 (3) Å c = 15.3608 (6) Å β = 97.599 (2)° V = 1696.35 (11) Å3 Z = 4 Mo Kα radiation μ = 0.20 mm−1 T = 173 K 0.29 × 0.23 × 0.17 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.653, T max = 0.746 12919 measured reflections 2994 independent reflections 2154 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.173 S = 1.07 2994 reflections 212 parameters 14 restraints H-atom parameters constrained Δρmax = 0.86 e Å−3 Δρmin = −0.36 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536812042249/hg5259sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812042249/hg5259Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812042249/hg5259Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H22O2SF(000) = 720
Mr = 338.45Dx = 1.325 Mg m3
Monoclinic, P21/cMelting point = 424–425 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 15.2869 (5) ÅCell parameters from 2479 reflections
b = 7.2881 (3) Åθ = 2.7–28.1°
c = 15.3608 (6) ŵ = 0.20 mm1
β = 97.599 (2)°T = 173 K
V = 1696.35 (11) Å3Block, colourless
Z = 40.29 × 0.23 × 0.17 mm
Bruker SMART APEXII CCD diffractometer2994 independent reflections
Radiation source: rotating anode2154 reflections with I > 2σ(I)
Graphite multilayer monochromatorRint = 0.043
Detector resolution: 10.0 pixels mm-1θmax = 25.0°, θmin = 2.7°
φ– and ω–scansh = −18→18
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −8→8
Tmin = 0.653, Tmax = 0.746l = −16→18
12919 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: difference Fourier map
wR(F2) = 0.173H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0828P)2 + 1.5926P] where P = (Fo2 + 2Fc2)/3
2994 reflections(Δ/σ)max < 0.001
212 parametersΔρmax = 0.86 e Å3
14 restraintsΔρmin = −0.36 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.39884 (5)0.23817 (10)0.27487 (5)0.0298 (3)
O20.33603 (17)0.1030 (4)0.22826 (15)0.0577 (7)
O10.37504 (12)0.2498 (2)0.52846 (12)0.0243 (5)
C10.36912 (17)0.2579 (3)0.38147 (18)0.0231 (6)
C20.27970 (17)0.2531 (3)0.40194 (18)0.0214 (6)
C30.19556 (17)0.2513 (3)0.35376 (18)0.0230 (6)
H30.18850.25160.29140.028*
C40.12236 (18)0.2493 (3)0.39841 (19)0.0228 (6)
C50.13432 (18)0.2478 (3)0.49058 (18)0.0248 (6)
H50.08370.24710.52040.030*
C60.21657 (18)0.2473 (3)0.53943 (18)0.0253 (6)
H60.22390.24590.60180.030*
C70.28779 (17)0.2491 (3)0.49274 (18)0.0224 (6)
C80.42346 (17)0.2554 (3)0.45874 (18)0.0224 (6)
C90.03109 (17)0.2503 (3)0.34703 (19)0.0244 (6)
H90.03800.24720.28320.029*
C10−0.02605 (17)0.4168 (4)0.36192 (19)0.0309 (7)
H10A−0.00440.52840.33490.037*
H10B−0.02690.43910.42540.037*
C11−0.11767 (18)0.3623 (5)0.3166 (2)0.0388 (8)
H11A−0.12600.40380.25470.047*
H11B−0.16430.41780.34720.047*
C12−0.12123 (18)0.1522 (5)0.3216 (2)0.0382 (8)
H12A−0.13470.09880.26210.046*
H12B−0.16720.11260.35730.046*
C13−0.02941 (17)0.0915 (4)0.3647 (2)0.0319 (7)
H13A−0.02880.07220.42850.038*
H13B−0.0111−0.02350.33790.038*
C14A0.51894 (17)0.2566 (3)0.48277 (18)0.0232 (7)0.899 (5)
C15A0.57418 (15)0.3215 (5)0.4245 (2)0.0300 (5)0.899 (5)
H15A0.54950.36880.36900.036*0.899 (5)
C16A0.66532 (18)0.3175 (5)0.4470 (2)0.0300 (5)0.899 (5)
H16A0.70220.35840.40570.036*0.899 (5)
C17A0.70343 (17)0.2548 (3)0.52866 (19)0.0262 (7)0.899 (5)
C18A0.64777 (15)0.1982 (5)0.5875 (2)0.0300 (5)0.899 (5)
H18A0.67240.15850.64440.036*0.899 (5)
C19A0.55714 (18)0.1983 (5)0.5653 (2)0.0300 (5)0.899 (5)
H19A0.52050.15810.60690.036*0.899 (5)
C14B0.51894 (17)0.2566 (3)0.48277 (18)0.0232 (7)0.10
C15B0.5736 (12)0.174 (4)0.4248 (19)0.0300 (5)0.10
H15B0.54890.11840.37110.036*0.101 (5)
C16B0.6644 (13)0.178 (4)0.4502 (10)0.0300 (5)0.10
H16B0.70160.12610.41190.036*0.101 (5)
C17B0.70343 (17)0.2548 (3)0.52866 (19)0.0262 (7)0.10
C18B0.6487 (11)0.308 (4)0.5890 (11)0.0300 (5)0.10
H18B0.67340.34350.64650.036*0.101 (5)
C19B0.5582 (12)0.309 (4)0.5658 (8)0.0300 (5)0.10
H19B0.52170.34680.60800.036*0.101 (5)
C200.80136 (18)0.2528 (4)0.5536 (2)0.0351 (8)
H20A0.83000.29830.50440.053*
H20B0.82100.12710.56780.053*
H20C0.81720.33170.60490.053*
C210.3672 (2)0.4541 (5)0.2339 (2)0.0483 (9)
H21A0.36890.45640.17040.072*
H21B0.40780.54680.26230.072*
H21C0.30720.48080.24600.072*
U11U22U33U12U13U23
S10.0305 (4)0.0384 (5)0.0214 (4)0.0008 (3)0.0067 (3)−0.0013 (3)
O20.0737 (17)0.0619 (17)0.0379 (14)−0.0226 (14)0.0086 (12)−0.0090 (13)
O10.0240 (10)0.0286 (11)0.0196 (10)0.0005 (8)0.0007 (8)−0.0009 (8)
C10.0226 (13)0.0249 (14)0.0223 (14)0.0016 (11)0.0048 (11)0.0017 (11)
C20.0262 (14)0.0185 (13)0.0201 (14)0.0004 (10)0.0051 (11)−0.0009 (11)
C30.0275 (14)0.0231 (14)0.0180 (14)0.0003 (11)0.0020 (11)0.0003 (11)
C40.0236 (14)0.0192 (14)0.0253 (15)0.0000 (10)0.0022 (11)0.0004 (11)
C50.0246 (14)0.0259 (15)0.0243 (15)−0.0008 (11)0.0052 (11)0.0002 (12)
C60.0293 (15)0.0285 (15)0.0183 (14)0.0000 (11)0.0035 (11)−0.0002 (12)
C70.0225 (14)0.0212 (14)0.0227 (15)−0.0008 (11)−0.0002 (11)−0.0013 (11)
C80.0250 (14)0.0205 (14)0.0224 (14)0.0000 (11)0.0052 (11)−0.0015 (11)
C90.0249 (14)0.0268 (15)0.0209 (14)−0.0005 (11)0.0008 (11)−0.0003 (12)
C100.0300 (15)0.0300 (16)0.0318 (17)0.0035 (12)0.0008 (12)−0.0011 (13)
C110.0247 (16)0.049 (2)0.0411 (19)0.0059 (14)0.0006 (13)0.0031 (16)
C120.0257 (16)0.050 (2)0.0375 (18)−0.0083 (14)0.0003 (13)−0.0014 (15)
C130.0301 (15)0.0291 (16)0.0354 (17)−0.0051 (12)−0.0001 (13)−0.0006 (13)
C14A0.0244 (14)0.0200 (14)0.0243 (15)0.0000 (11)0.0002 (11)−0.0019 (11)
C15A0.0283 (9)0.0332 (11)0.0279 (9)−0.0013 (7)0.0020 (7)0.0012 (8)
C16A0.0283 (9)0.0332 (11)0.0279 (9)−0.0013 (7)0.0020 (7)0.0012 (8)
C17A0.0247 (14)0.0206 (14)0.0322 (17)0.0009 (11)−0.0006 (12)−0.0041 (12)
C18A0.0283 (9)0.0332 (11)0.0279 (9)−0.0013 (7)0.0020 (7)0.0012 (8)
C19A0.0283 (9)0.0332 (11)0.0279 (9)−0.0013 (7)0.0020 (7)0.0012 (8)
C14B0.0244 (14)0.0200 (14)0.0243 (15)0.0000 (11)0.0002 (11)−0.0019 (11)
C15B0.0283 (9)0.0332 (11)0.0279 (9)−0.0013 (7)0.0020 (7)0.0012 (8)
C16B0.0283 (9)0.0332 (11)0.0279 (9)−0.0013 (7)0.0020 (7)0.0012 (8)
C17B0.0247 (14)0.0206 (14)0.0322 (17)0.0009 (11)−0.0006 (12)−0.0041 (12)
C18B0.0283 (9)0.0332 (11)0.0279 (9)−0.0013 (7)0.0020 (7)0.0012 (8)
C19B0.0283 (9)0.0332 (11)0.0279 (9)−0.0013 (7)0.0020 (7)0.0012 (8)
C200.0241 (15)0.0390 (18)0.0413 (19)−0.0006 (13)0.0007 (13)0.0002 (14)
C210.068 (2)0.052 (2)0.0264 (18)0.0205 (18)0.0108 (16)0.0108 (16)
S1—O21.491 (2)C12—H12A0.9900
S1—C211.740 (3)C12—H12B0.9900
S1—C11.762 (3)C13—H13A0.9900
O1—C71.374 (3)C13—H13B0.9900
O1—C81.381 (3)C14A—C19A1.390 (4)
C1—C81.356 (4)C14A—C15A1.393 (3)
C1—C21.443 (4)C15A—C16A1.391 (3)
C2—C71.384 (4)C15A—H15A0.9500
C2—C31.397 (4)C16A—C17A1.389 (4)
C3—C41.388 (4)C16A—H16A0.9500
C3—H30.9500C17A—C18A1.384 (3)
C4—C51.403 (4)C17A—C201.496 (4)
C4—C91.510 (4)C18A—C19A1.382 (3)
C5—C61.376 (4)C18A—H18A0.9500
C5—H50.9500C19A—H19A0.9500
C6—C71.381 (4)C15B—C16B1.392 (3)
C6—H60.9500C15B—H15B0.9500
C8—C14A1.458 (4)C16B—H16B0.9500
C9—C131.528 (4)C18B—C19B1.383 (3)
C9—C101.529 (4)C18B—H18B0.9500
C9—H91.0000C19B—H19B0.9500
C10—C111.532 (4)C20—H20A0.9800
C10—H10A0.9900C20—H20B0.9800
C10—H10B0.9900C20—H20C0.9800
C11—C121.534 (5)C21—H21A0.9800
C11—H11A0.9900C21—H21B0.9800
C11—H11B0.9900C21—H21C0.9800
C12—C131.536 (4)
O2—S1—C21107.08 (17)C11—C12—C13105.8 (2)
O2—S1—C1105.74 (13)C11—C12—H12A110.6
C21—S1—C199.72 (14)C13—C12—H12A110.6
C7—O1—C8106.4 (2)C11—C12—H12B110.6
C8—C1—C2107.3 (2)C13—C12—H12B110.6
C8—C1—S1127.5 (2)H12A—C12—H12B108.7
C2—C1—S1124.6 (2)C9—C13—C12104.2 (2)
C7—C2—C3119.1 (2)C9—C13—H13A110.9
C7—C2—C1105.0 (2)C12—C13—H13A110.9
C3—C2—C1135.8 (3)C9—C13—H13B110.9
C4—C3—C2119.0 (2)C12—C13—H13B110.9
C4—C3—H3120.5H13A—C13—H13B108.9
C2—C3—H3120.5C19A—C14A—C15A118.2 (3)
C3—C4—C5119.5 (3)C19A—C14A—C8121.0 (2)
C3—C4—C9119.4 (2)C15A—C14A—C8120.8 (3)
C5—C4—C9121.0 (2)C16A—C15A—C14A120.4 (3)
C6—C5—C4122.5 (3)C16A—C15A—H15A119.8
C6—C5—H5118.7C14A—C15A—H15A119.8
C4—C5—H5118.7C17A—C16A—C15A121.2 (3)
C5—C6—C7116.3 (3)C17A—C16A—H16A119.4
C5—C6—H6121.9C15A—C16A—H16A119.4
C7—C6—H6121.9C18A—C17A—C16A117.9 (3)
O1—C7—C6125.7 (2)C18A—C17A—C20120.7 (3)
O1—C7—C2110.8 (2)C16A—C17A—C20121.4 (3)
C6—C7—C2123.5 (3)C19A—C18A—C17A121.4 (3)
C1—C8—O1110.5 (2)C19A—C18A—H18A119.3
C1—C8—C14A134.3 (3)C17A—C18A—H18A119.3
O1—C8—C14A115.2 (2)C18A—C19A—C14A120.8 (3)
C4—C9—C13116.3 (2)C18A—C19A—H19A119.6
C4—C9—C10115.6 (2)C14A—C19A—H19A119.6
C13—C9—C10101.7 (2)C16B—C15B—H15B121.4
C4—C9—H9107.6C15B—C16B—H16B118.3
C13—C9—H9107.6C19B—C18B—H18B119.9
C10—C9—H9107.6C18B—C19B—H19B119.0
C9—C10—C11103.4 (2)C17A—C20—H20A109.5
C9—C10—H10A111.1C17A—C20—H20B109.5
C11—C10—H10A111.1H20A—C20—H20B109.5
C9—C10—H10B111.1C17A—C20—H20C109.5
C11—C10—H10B111.1H20A—C20—H20C109.5
H10A—C10—H10B109.0H20B—C20—H20C109.5
C10—C11—C12105.8 (2)S1—C21—H21A109.5
C10—C11—H11A110.6S1—C21—H21B109.5
C12—C11—H11A110.6H21A—C21—H21B109.5
C10—C11—H11B110.6S1—C21—H21C109.5
C12—C11—H11B110.6H21A—C21—H21C109.5
H11A—C11—H11B108.7H21B—C21—H21C109.5
O2—S1—C1—C8133.7 (3)C7—O1—C8—C1−0.1 (3)
C21—S1—C1—C8−115.4 (3)C7—O1—C8—C14A−179.9 (2)
O2—S1—C1—C2−36.8 (3)C3—C4—C9—C13123.0 (3)
C21—S1—C1—C274.2 (3)C5—C4—C9—C13−57.6 (3)
C8—C1—C2—C70.4 (3)C3—C4—C9—C10−117.8 (3)
S1—C1—C2—C7172.45 (19)C5—C4—C9—C1061.6 (3)
C8—C1—C2—C3−179.4 (3)C4—C9—C10—C11−169.5 (2)
S1—C1—C2—C3−7.3 (4)C13—C9—C10—C11−42.5 (3)
C7—C2—C3—C41.3 (4)C9—C10—C11—C1228.5 (3)
C1—C2—C3—C4−179.0 (3)C10—C11—C12—C13−3.3 (3)
C2—C3—C4—C5−0.4 (4)C4—C9—C13—C12167.1 (2)
C2—C3—C4—C9179.1 (2)C10—C9—C13—C1240.5 (3)
C3—C4—C5—C6−0.4 (4)C11—C12—C13—C9−23.1 (3)
C9—C4—C5—C6−179.8 (2)C1—C8—C14A—C19A−160.3 (3)
C4—C5—C6—C70.2 (4)O1—C8—C14A—C19A19.4 (4)
C8—O1—C7—C6−178.8 (2)C1—C8—C14A—C15A21.6 (4)
C8—O1—C7—C20.3 (3)O1—C8—C14A—C15A−158.7 (3)
C5—C6—C7—O1179.7 (2)C19A—C14A—C15A—C16A3.6 (4)
C5—C6—C7—C20.7 (4)C8—C14A—C15A—C16A−178.2 (3)
C3—C2—C7—O1179.4 (2)C14A—C15A—C16A—C17A−2.1 (5)
C1—C2—C7—O1−0.4 (3)C15A—C16A—C17A—C18A−0.7 (5)
C3—C2—C7—C6−1.5 (4)C15A—C16A—C17A—C20−179.1 (3)
C1—C2—C7—C6178.7 (2)C16A—C17A—C18A—C19A2.0 (5)
C2—C1—C8—O1−0.2 (3)C20—C17A—C18A—C19A−179.6 (3)
S1—C1—C8—O1−171.98 (18)C17A—C18A—C19A—C14A−0.4 (5)
C2—C1—C8—C14A179.6 (3)C15A—C14A—C19A—C18A−2.4 (5)
S1—C1—C8—C14A7.8 (4)C8—C14A—C19A—C18A179.4 (3)
D—H···AD—HH···AD···AD—H···A
C20—H20B···Cgi0.982.783.665 (2)150
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C2–C7 benzene ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C20—H20BCg i 0.982.783.665 (2)150

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  5-Cyclo-pentyl-3-methyl-sulfinyl-2-phenyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-31

3.  5-Cyclo-pentyl-2-(4-fluoro-phen-yl)-3-methyl-sulfinyl-1-benzofuran.

Authors:  Pil Ja Seo; Hong Dae Choi; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-14
  3 in total

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