Literature DB >> 22064466

Dbp5, Gle1-IP6 and Nup159: a working model for mRNP export.

Andrew W Folkmann1, Kristen N Noble, Charles N Cole, Susan R Wente.   

Abstract

Gene expression is a stepwise process involving distinct cellular processes including transcription, mRNA (mRNA) processing, mRNA export, and translation. As mRNAs are being synthesized, proteins associate with the RNA to form messenger ribonucleoprotein particles (mRNPs). Previous studies have demonstrated that the RNA-binding protein composition of these mRNPs is dynamic, changing as the mRNP moves through the different steps of gene expression, and playing a critical role in these events. An important step during this maturation process occurs at the cytoplasmic face of the nuclear pore complex (NPC) where the export protein Gle1 bound to inositol hexakisphosphate (IP 6) spatially activates the ATP-hydrolysis and mRNP-remodeling activity of the DEAD-box protein Dbp5. Recent work from our laboratory and others has provided important insights into the function and regulation of Dbp5. These include a more detailed explanation of the mechanism of Dbp5 RNP remodeling, the role of Gle1-IP6 in stimulating Dbp5 ATPase activity, and the identification of a novel paradigm for regulation of Dbp5 by Nup159. Based on in vitro biochemical assays, X-ray crystallography, and corresponding in vivo phenotypes, we propose here an updated model of the Dbp5 cycle during mRNP export through the NPC. This takes into account all available data and provides a platform for future studies.

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Year:  2011        PMID: 22064466      PMCID: PMC3324343          DOI: 10.4161/nucl.2.6.17881

Source DB:  PubMed          Journal:  Nucleus        ISSN: 1949-1034            Impact factor:   4.197


  59 in total

Review 1.  GTP hydrolysis mechanism of Ras-like GTPases.

Authors:  Guangpu Li; Xuejun C Zhang
Journal:  J Mol Biol       Date:  2004-07-23       Impact factor: 5.469

2.  The N-terminal domain of Nup159 forms a beta-propeller that functions in mRNA export by tethering the helicase Dbp5 to the nuclear pore.

Authors:  Christine S Weirich; Jan P Erzberger; James M Berger; Karsten Weis
Journal:  Mol Cell       Date:  2004-12-03       Impact factor: 17.970

Review 3.  The DEAD-box protein family of RNA helicases.

Authors:  Olivier Cordin; Josette Banroques; N Kyle Tanner; Patrick Linder
Journal:  Gene       Date:  2005-12-07       Impact factor: 3.688

4.  The DEAD-box RNA helicase Dbp5 functions in translation termination.

Authors:  Thomas Gross; Anja Siepmann; Dorotheé Sturm; Merle Windgassen; John J Scarcelli; Matthias Seedorf; Charles N Cole; Heike Krebber
Journal:  Science       Date:  2007-02-02       Impact factor: 47.728

5.  DEAD-box proteins can completely separate an RNA duplex using a single ATP.

Authors:  Yingfeng Chen; Jeffrey P Potratz; Pilar Tijerina; Mark Del Campo; Alan M Lambowitz; Rick Russell
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-16       Impact factor: 11.205

6.  The transformation suppressor Pdcd4 is a novel eukaryotic translation initiation factor 4A binding protein that inhibits translation.

Authors:  Hsin-Sheng Yang; Aaron P Jansen; Anton A Komar; Xiaojing Zheng; William C Merrick; Sylvain Costes; Stephen J Lockett; Nahum Sonenberg; Nancy H Colburn
Journal:  Mol Cell Biol       Date:  2003-01       Impact factor: 4.272

Review 7.  Keeping mRNPs in check during assembly and nuclear export.

Authors:  Evelina Tutucci; Françoise Stutz
Journal:  Nat Rev Mol Cell Biol       Date:  2011-06       Impact factor: 94.444

8.  Remodeling of the pioneer translation initiation complex involves translation and the karyopherin importin beta.

Authors:  Hanae Sato; Lynne E Maquat
Journal:  Genes Dev       Date:  2009-11-01       Impact factor: 11.361

9.  Modulation of the helicase activity of eIF4A by eIF4B, eIF4H, and eIF4F.

Authors:  G W Rogers; N J Richter; W F Lima; W C Merrick
Journal:  J Biol Chem       Date:  2001-06-19       Impact factor: 5.157

Review 10.  RNA helicases at work: binding and rearranging.

Authors:  Eckhard Jankowsky
Journal:  Trends Biochem Sci       Date:  2011-01       Impact factor: 13.807

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  58 in total

Review 1.  Control of mammalian gene expression by selective mRNA export.

Authors:  Vihandha O Wickramasinghe; Ronald A Laskey
Journal:  Nat Rev Mol Cell Biol       Date:  2015-06-17       Impact factor: 94.444

2.  Gle1 Regulates RNA Binding of the DEAD-Box Helicase Ded1 in Its Complex Role in Translation Initiation.

Authors:  Peyman P Aryanpur; Chelsea A Regan; John M Collins; Telsa M Mittelmeier; David M Renner; Ashley M Vergara; Nicolette P Brown; Timothy A Bolger
Journal:  Mol Cell Biol       Date:  2017-10-13       Impact factor: 4.272

Review 3.  The Structure of the Nuclear Pore Complex (An Update).

Authors:  Daniel H Lin; André Hoelz
Journal:  Annu Rev Biochem       Date:  2019-03-18       Impact factor: 23.643

4.  Chtop is a component of the dynamic TREX mRNA export complex.

Authors:  Chung-Te Chang; Guillaume M Hautbergue; Matthew J Walsh; Nicolas Viphakone; Thamar B van Dijk; Sjaak Philipsen; Stuart A Wilson
Journal:  EMBO J       Date:  2013-01-08       Impact factor: 11.598

5.  Nup42 and IP6 coordinate Gle1 stimulation of Dbp5/DDX19B for mRNA export in yeast and human cells.

Authors:  Rebecca L Adams; Aaron C Mason; Laura Glass; Susan R Wente
Journal:  Traffic       Date:  2017-10-16       Impact factor: 6.215

6.  A single molecule view on Dbp5 and mRNA at the nuclear pore.

Authors:  Tim Kaminski; Jan Peter Siebrasse; Ulrich Kubitscheck
Journal:  Nucleus       Date:  2013-01-01       Impact factor: 4.197

Review 7.  Uncovering nuclear pore complexity with innovation.

Authors:  Rebecca L Adams; Susan R Wente
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

Review 8.  Aiding and abetting cancer: mRNA export and the nuclear pore.

Authors:  Biljana Culjkovic-Kraljacic; Katherine L B Borden
Journal:  Trends Cell Biol       Date:  2013-04-10       Impact factor: 20.808

Review 9.  Postage for the messenger: designating routes for nuclear mRNA export.

Authors:  Barbara J Natalizio; Susan R Wente
Journal:  Trends Cell Biol       Date:  2013-04-11       Impact factor: 20.808

10.  Nucleoporin FG domains facilitate mRNP remodeling at the cytoplasmic face of the nuclear pore complex.

Authors:  Rebecca L Adams; Laura J Terry; Susan R Wente
Journal:  Genetics       Date:  2014-06-14       Impact factor: 4.562

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