Literature DB >> 30883195

The Structure of the Nuclear Pore Complex (An Update).

Daniel H Lin1, André Hoelz1.   

Abstract

The nuclear pore complex (NPC) serves as the sole bidirectional gateway of macromolecules in and out of the nucleus. Owing to its size and complexity (∼1,000 protein subunits, ∼110 MDa in humans), the NPC has remained one of the foremost challenges for structure determination. Structural studies have now provided atomic-resolution crystal structures of most nucleoporins. The acquisition of these structures, combined with biochemical reconstitution experiments, cross-linking mass spectrometry, and cryo-electron tomography, has facilitated the determination of the near-atomic overall architecture of the symmetric core of the human, fungal, and algal NPCs. Here, we discuss the insights gained from these new advances and outstanding issues regarding NPC structure and function. The powerful combination of bottom-up and top-down approaches toward determining the structure of the NPC offers a paradigm for uncovering the architectures of other complex biological machines to near-atomic resolution.

Entities:  

Keywords:  X-ray crystallography; electron microscopy; integrative structural biology; mRNA export; nuclear pore complex; nucleocytoplasmic transport

Mesh:

Substances:

Year:  2019        PMID: 30883195      PMCID: PMC6588426          DOI: 10.1146/annurev-biochem-062917-011901

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  297 in total

1.  The entire Nup107-160 complex, including three new members, is targeted as one entity to kinetochores in mitosis.

Authors:  Isabelle Loïodice; Annabelle Alves; Gwénaël Rabut; Megan Van Overbeek; Jan Ellenberg; Jean-Baptiste Sibarita; Valérie Doye
Journal:  Mol Biol Cell       Date:  2004-05-14       Impact factor: 4.138

2.  Simple fold composition and modular architecture of the nuclear pore complex.

Authors:  Damien Devos; Svetlana Dokudovskaya; Rosemary Williams; Frank Alber; Narayanan Eswar; Brian T Chait; Michael P Rout; Andrej Sali
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-06       Impact factor: 11.205

3.  Snapshots of nuclear pore complexes in action captured by cryo-electron tomography.

Authors:  Martin Beck; Vladan Lucić; Friedrich Förster; Wolfgang Baumeister; Ohad Medalia
Journal:  Nature       Date:  2007-09-12       Impact factor: 49.962

Review 4.  Nuclear localization signals for four distinct karyopherin-β nuclear import systems.

Authors:  Michael Soniat; Yuh Min Chook
Journal:  Biochem J       Date:  2015-06-15       Impact factor: 3.857

5.  Nup116p and nup100p are interchangeable through a conserved motif which constitutes a docking site for the mRNA transport factor gle2p.

Authors:  S M Bailer; S Siniossoglou; A Podtelejnikov; A Hellwig; M Mann; E Hurt
Journal:  EMBO J       Date:  1998-02-16       Impact factor: 11.598

6.  Ring cycle for dilating and constricting the nuclear pore.

Authors:  Sozanne R Solmaz; Günter Blobel; Ivo Melcák
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-11       Impact factor: 11.205

7.  Protein interfaces of the conserved Nup84 complex from Chaetomium thermophilum shown by crosslinking mass spectrometry and electron microscopy.

Authors:  Karsten Thierbach; Alexander von Appen; Matthias Thoms; Martin Beck; Dirk Flemming; Ed Hurt
Journal:  Structure       Date:  2013-08-15       Impact factor: 5.006

8.  Mutation in nuclear pore component NUP155 leads to atrial fibrillation and early sudden cardiac death.

Authors:  Xianqin Zhang; Shenghan Chen; Shin Yoo; Susmita Chakrabarti; Teng Zhang; Tie Ke; Carlos Oberti; Sandro L Yong; Fang Fang; Lin Li; Roberto de la Fuente; Lejin Wang; Qiuyun Chen; Qing Kenneth Wang
Journal:  Cell       Date:  2008-12-12       Impact factor: 41.582

9.  Comparative genomic evidence for a complete nuclear pore complex in the last eukaryotic common ancestor.

Authors:  Nadja Neumann; Daniel Lundin; Anthony M Poole
Journal:  PLoS One       Date:  2010-10-08       Impact factor: 3.240

10.  Gle1 functions during mRNA export in an oligomeric complex that is altered in human disease.

Authors:  Andrew W Folkmann; Scott E Collier; Xiaoyan Zhan; Melanie D Ohi; Susan R Wente
Journal:  Cell       Date:  2013-10-24       Impact factor: 41.582

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  87 in total

1.  Nucleoporin Condensates Drive Nuclear Pore Complex Assembly in Oocytes.

Authors:  George W Mobbs; André Hoelz
Journal:  Trends Biochem Sci       Date:  2020-02-13       Impact factor: 13.807

Review 2.  The Quest for the Blueprint of the Nuclear Pore Complex.

Authors:  Joseph S Glavy
Journal:  Protein J       Date:  2019-08       Impact factor: 2.371

Review 3.  Light and shadow on the mechanisms of integration site selection in yeast Ty retrotransposon families.

Authors:  Amandine Bonnet; Pascale Lesage
Journal:  Curr Genet       Date:  2021-02-15       Impact factor: 3.886

Review 4.  Nuclear pore complexes - a doorway to neural injury in neurodegeneration.

Authors:  Alyssa N Coyne; Jeffrey D Rothstein
Journal:  Nat Rev Neurol       Date:  2022-04-29       Impact factor: 42.937

5.  In-cell architecture of the nuclear pore and snapshots of its turnover.

Authors:  Matteo Allegretti; Christian E Zimmerli; Vasileios Rantos; Florian Wilfling; Paolo Ronchi; Herman K H Fung; Chia-Wei Lee; Wim Hagen; Beata Turoňová; Kai Karius; Mandy Börmel; Xiaojie Zhang; Christoph W Müller; Yannick Schwab; Julia Mahamid; Boris Pfander; Jan Kosinski; Martin Beck
Journal:  Nature       Date:  2020-09-02       Impact factor: 49.962

Review 6.  Viral use and subversion of membrane organization and trafficking.

Authors:  Miguel Hernandez-Gonzalez; Gabrielle Larocque; Michael Way
Journal:  J Cell Sci       Date:  2021-03-04       Impact factor: 5.285

Review 7.  Emerging molecular functions and novel roles for the DEAD-box protein Dbp5/DDX19 in gene expression.

Authors:  Arvind Arul Nambi Rajan; Ben Montpetit
Journal:  Cell Mol Life Sci       Date:  2020-11-17       Impact factor: 9.261

Review 8.  Nuclear pore complexes in development and tissue homeostasis.

Authors:  Valeria Guglielmi; Stephen Sakuma; Maximiliano A D'Angelo
Journal:  Development       Date:  2020-12-15       Impact factor: 6.868

9.  G4C2 Repeat RNA Initiates a POM121-Mediated Reduction in Specific Nucleoporins in C9orf72 ALS/FTD.

Authors:  Alyssa N Coyne; Benjamin L Zaepfel; Lindsey Hayes; Boris Fitchman; Yuval Salzberg; En-Ching Luo; Kelly Bowen; Hannah Trost; Stefan Aigner; Frank Rigo; Gene W Yeo; Amnon Harel; Clive N Svendsen; Dhruv Sareen; Jeffrey D Rothstein
Journal:  Neuron       Date:  2020-07-15       Impact factor: 17.173

10.  Snx4-assisted vacuolar targeting of transcription factors defines a new autophagy pathway for controlling ATG expression.

Authors:  Sara E Hanley; Stephen D Willis; Katrina F Cooper
Journal:  Autophagy       Date:  2021-03-08       Impact factor: 16.016

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