Literature DB >> 22969687

1-[Bis(4-fluoro-phen-yl)meth-yl]piperazine.

A S Dayananda, Grzegorz Dutkiewicz, H S Yathirajan, A R Ramesha, Maciej Kubicki.   

Abstract

In the title mol-ecule, C(17)H(18)F(2)N(2), the dihedral angle between the benzene rings is 73.40 (3)°. The piperazine ring is close to an ideal chair conformation and the N-H hydrogen is in an equatorial position. In the crystal, molecules are linked via weak C-H⋯F hydrogen bonds.

Entities:  

Year:  2012        PMID: 22969687      PMCID: PMC3435841          DOI: 10.1107/S1600536812036902

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For medical applications of piperazines, see: Bogatcheva et al. (2006 ▶); Brockunier et al. (2004 ▶). For related structures, see: Betz et al. (2011a ▶,b ▶); Hu et al. (2003 ▶); Naveen et al. (2006 ▶). For asymmetry parameters, see: Duax & Norton (1975 ▶).

Experimental

Crystal data

C17H18F2N2 M = 288.33 Monoclinic, a = 12.1574 (5) Å b = 8.8559 (2) Å c = 13.8604 (4) Å β = 93.355 (3)° V = 1489.72 (8) Å3 Z = 4 Cu Kα radiation μ = 0.77 mm−1 T = 130 K 0.15 × 0.08 × 0.06 mm

Data collection

Atlas SuperNova (Single source at offset) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.828, T max = 1.000 8816 measured reflections 3006 independent reflections 2847 reflections with I > 2σ(I) R int = 0.010

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.096 S = 1.04 3006 reflections 262 parameters All H-atom parameters refined Δρmax = 0.18 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812036902/mw2085sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812036902/mw2085Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812036902/mw2085Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H18F2N2F(000) = 608
Mr = 288.33Dx = 1.286 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.5418 Å
Hall symbol: -P 2ybcCell parameters from 110 reflections
a = 12.1574 (5) Åθ = 2.9–27.8°
b = 8.8559 (2) ŵ = 0.77 mm1
c = 13.8604 (4) ÅT = 130 K
β = 93.355 (3)°Block, colourless
V = 1489.72 (8) Å30.15 × 0.08 × 0.06 mm
Z = 4
Atlas SuperNova (Single source at offset) diffractometer3006 independent reflections
Radiation source: SuperNova (Cu) X-ray Source2847 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.010
Detector resolution: 10.5357 pixels mm-1θmax = 75.3°, θmin = 3.6°
ω scanh = −15→15
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −9→10
Tmin = 0.828, Tmax = 1.000l = −14→17
8816 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: difference Fourier map
wR(F2) = 0.096All H-atom parameters refined
S = 1.04w = 1/[σ2(Fo2) + (0.0518P)2 + 0.3446P] where P = (Fo2 + 2Fc2)/3
3006 reflections(Δ/σ)max = 0.001
262 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.71855 (8)0.26307 (12)0.64093 (7)0.0297 (2)
H10.6808 (10)0.1909 (14)0.5950 (9)0.031 (3)*
N110.82339 (7)0.19519 (10)0.67957 (6)0.0296 (2)
C120.89231 (9)0.15265 (14)0.59996 (9)0.0377 (3)
H12B0.9123 (11)0.2450 (16)0.5634 (10)0.040 (3)*
H12A0.8512 (12)0.0821 (16)0.5550 (10)0.044 (4)*
C130.99715 (9)0.07353 (14)0.63834 (9)0.0388 (3)
H13B1.0416 (12)0.0469 (16)0.5818 (11)0.048 (4)*
H13A1.0429 (11)0.1472 (16)0.6811 (10)0.041 (3)*
N140.96894 (8)−0.06217 (11)0.69096 (8)0.0400 (2)
H141.0301 (12)−0.1145 (17)0.7121 (10)0.047 (4)*
C150.90455 (10)−0.01932 (14)0.77224 (10)0.0428 (3)
H15B0.9468 (12)0.0538 (18)0.8199 (10)0.050 (4)*
H15A0.8848 (12)−0.1141 (18)0.8085 (11)0.054 (4)*
C160.79931 (9)0.05778 (13)0.73443 (10)0.0388 (3)
H16B0.7563 (12)−0.0116 (17)0.6926 (10)0.046 (4)*
H16A0.7553 (11)0.0865 (16)0.7897 (10)0.043 (4)*
C210.64243 (8)0.29345 (11)0.72207 (7)0.0282 (2)
C220.53738 (9)0.23052 (12)0.71842 (9)0.0343 (2)
H220.5114 (11)0.1663 (16)0.6633 (10)0.040 (3)*
C230.46608 (9)0.25595 (13)0.79170 (9)0.0379 (3)
H230.3926 (13)0.2108 (17)0.7896 (11)0.051 (4)*
C240.50228 (9)0.34553 (12)0.86750 (8)0.0344 (2)
F240.43371 (6)0.37247 (9)0.93966 (5)0.0496 (2)
C250.60588 (9)0.41045 (12)0.87452 (8)0.0324 (2)
H250.6270 (11)0.4725 (16)0.9295 (10)0.038 (3)*
C260.67547 (8)0.38383 (12)0.80075 (8)0.0299 (2)
H260.7491 (12)0.4266 (15)0.8047 (10)0.042 (3)*
C310.73448 (8)0.40781 (12)0.58434 (7)0.0301 (2)
C320.81328 (9)0.51586 (13)0.61203 (8)0.0369 (3)
H320.8644 (12)0.4954 (16)0.6675 (10)0.045 (4)*
C330.82205 (10)0.65060 (14)0.56149 (9)0.0418 (3)
H330.8754 (13)0.7275 (19)0.5793 (11)0.056 (4)*
C340.75027 (10)0.67407 (13)0.48296 (9)0.0401 (3)
F340.75839 (7)0.80528 (9)0.43211 (6)0.0570 (2)
C350.66997 (10)0.57242 (15)0.45345 (8)0.0426 (3)
H350.6225 (13)0.5946 (19)0.3972 (12)0.057 (4)*
C360.66273 (9)0.43910 (14)0.50508 (8)0.0370 (3)
H360.6086 (12)0.3684 (17)0.4860 (10)0.045 (4)*
U11U22U33U12U13U23
C10.0265 (5)0.0272 (5)0.0352 (5)−0.0020 (4)−0.0011 (4)−0.0051 (4)
N110.0259 (4)0.0261 (4)0.0369 (5)0.0014 (3)0.0034 (3)−0.0010 (3)
C120.0340 (5)0.0403 (6)0.0393 (6)0.0027 (5)0.0062 (4)−0.0066 (5)
C130.0296 (5)0.0384 (6)0.0490 (7)0.0004 (4)0.0071 (5)−0.0099 (5)
N140.0278 (5)0.0288 (5)0.0634 (6)0.0031 (4)0.0023 (4)−0.0078 (4)
C150.0353 (6)0.0338 (6)0.0600 (7)0.0080 (5)0.0096 (5)0.0089 (5)
C160.0298 (5)0.0283 (5)0.0591 (7)0.0025 (4)0.0092 (5)0.0061 (5)
C210.0259 (5)0.0220 (5)0.0363 (5)0.0016 (4)−0.0006 (4)0.0011 (4)
C220.0284 (5)0.0273 (5)0.0470 (6)−0.0023 (4)−0.0004 (4)−0.0037 (4)
C230.0270 (5)0.0311 (6)0.0559 (7)−0.0020 (4)0.0051 (5)0.0017 (5)
C240.0328 (5)0.0287 (5)0.0426 (6)0.0060 (4)0.0104 (4)0.0056 (4)
F240.0458 (4)0.0492 (4)0.0562 (4)0.0006 (3)0.0237 (3)−0.0013 (3)
C250.0343 (5)0.0272 (5)0.0357 (5)0.0030 (4)0.0007 (4)0.0009 (4)
C260.0258 (5)0.0267 (5)0.0370 (5)−0.0006 (4)−0.0008 (4)0.0010 (4)
C310.0291 (5)0.0300 (5)0.0312 (5)0.0015 (4)0.0028 (4)−0.0034 (4)
C320.0333 (5)0.0375 (6)0.0393 (6)−0.0047 (4)−0.0035 (4)0.0048 (5)
C330.0365 (6)0.0373 (6)0.0518 (7)−0.0054 (5)0.0045 (5)0.0058 (5)
C340.0426 (6)0.0368 (6)0.0423 (6)0.0095 (5)0.0138 (5)0.0110 (5)
F340.0578 (5)0.0500 (5)0.0649 (5)0.0125 (4)0.0191 (4)0.0278 (4)
C350.0457 (6)0.0478 (7)0.0339 (6)0.0133 (5)−0.0014 (5)0.0017 (5)
C360.0370 (6)0.0373 (6)0.0359 (5)0.0028 (5)−0.0041 (4)−0.0074 (5)
C1—N111.4808 (13)C22—C231.3917 (16)
C1—C311.5211 (15)C22—H220.989 (14)
C1—C211.5216 (14)C23—C241.3684 (17)
C1—H10.996 (12)C23—H230.978 (16)
N11—C121.4729 (14)C24—F241.3601 (12)
N11—C161.4734 (14)C24—C251.3828 (16)
C12—C131.5229 (16)C25—C261.3849 (15)
C12—H12B0.999 (14)C25—H250.962 (14)
C12—H12A0.996 (15)C26—H260.970 (14)
C13—N141.4571 (16)C31—C361.3901 (15)
C13—H13B1.006 (15)C31—C321.3920 (15)
C13—H13A1.023 (14)C32—C331.3909 (16)
N14—C151.4592 (16)C32—H320.976 (14)
N14—H140.909 (15)C33—C341.3706 (17)
C15—C161.5164 (16)C33—H330.962 (17)
C15—H15B1.039 (15)C34—F341.3656 (13)
C15—H15A1.015 (16)C34—C351.3725 (19)
C16—H16B0.976 (15)C35—C361.3861 (18)
C16—H16A0.993 (14)C35—H350.963 (16)
C21—C221.3917 (14)C36—H360.935 (15)
C21—C261.3928 (15)
N11—C1—C31113.31 (8)C22—C21—C26118.72 (10)
N11—C1—C21110.63 (8)C22—C21—C1119.93 (9)
C31—C1—C21109.48 (8)C26—C21—C1121.35 (9)
N11—C1—H1109.0 (7)C21—C22—C23121.21 (10)
C31—C1—H1106.2 (7)C21—C22—H22120.6 (8)
C21—C1—H1108.0 (7)C23—C22—H22118.2 (8)
C12—N11—C16108.32 (9)C24—C23—C22117.91 (10)
C12—N11—C1110.38 (8)C24—C23—H23120.8 (9)
C16—N11—C1109.22 (8)C22—C23—H23121.3 (9)
N11—C12—C13110.93 (9)F24—C24—C23118.87 (10)
N11—C12—H12B109.7 (8)F24—C24—C25118.05 (10)
C13—C12—H12B109.3 (8)C23—C24—C25123.08 (10)
N11—C12—H12A110.1 (8)C24—C25—C26118.07 (10)
C13—C12—H12A108.0 (8)C24—C25—H25119.6 (8)
H12B—C12—H12A108.9 (11)C26—C25—H25122.4 (8)
N14—C13—C12109.73 (9)C25—C26—C21121.01 (9)
N14—C13—H13B110.5 (8)C25—C26—H26119.6 (8)
C12—C13—H13B108.2 (8)C21—C26—H26119.4 (8)
N14—C13—H13A111.8 (8)C36—C31—C32118.08 (10)
C12—C13—H13A108.9 (8)C36—C31—C1118.86 (9)
H13B—C13—H13A107.6 (11)C32—C31—C1122.92 (9)
C13—N14—C15108.94 (9)C33—C32—C31121.51 (10)
C13—N14—H14111.7 (9)C33—C32—H32119.5 (9)
C15—N14—H14110.4 (9)C31—C32—H32119.0 (9)
N14—C15—C16109.28 (11)C34—C33—C32117.78 (11)
N14—C15—H15B112.6 (8)C34—C33—H33119.0 (9)
C16—C15—H15B108.4 (8)C32—C33—H33123.2 (9)
N14—C15—H15A108.7 (9)F34—C34—C33118.49 (11)
C16—C15—H15A108.9 (9)F34—C34—C35118.42 (11)
H15B—C15—H15A108.8 (12)C33—C34—C35123.09 (11)
N11—C16—C15111.17 (9)C34—C35—C36118.06 (11)
N11—C16—H16B109.2 (9)C34—C35—H35119.3 (10)
C15—C16—H16B109.5 (9)C36—C35—H35122.6 (10)
N11—C16—H16A108.6 (8)C35—C36—C31121.46 (11)
C15—C16—H16A109.3 (8)C35—C36—H36119.3 (9)
H16B—C16—H16A109.0 (11)C31—C36—H36119.3 (9)
C31—C1—N11—C12−62.03 (11)C22—C23—C24—C25−0.37 (17)
C21—C1—N11—C12174.59 (8)F24—C24—C25—C26−179.60 (9)
C31—C1—N11—C16178.99 (9)C23—C24—C25—C260.45 (16)
C21—C1—N11—C1655.61 (11)C24—C25—C26—C21−0.44 (15)
C16—N11—C12—C13−56.84 (12)C22—C21—C26—C250.36 (15)
C1—N11—C12—C13−176.37 (9)C1—C21—C26—C25−179.73 (9)
N11—C12—C13—N1459.56 (12)N11—C1—C31—C36145.48 (10)
C12—C13—N14—C15−60.72 (12)C21—C1—C31—C36−90.50 (11)
C13—N14—C15—C1660.98 (12)N11—C1—C31—C32−38.94 (14)
C12—N11—C16—C1557.53 (13)C21—C1—C31—C3285.07 (12)
C1—N11—C16—C15177.79 (10)C36—C31—C32—C33−1.06 (17)
N14—C15—C16—N11−60.40 (13)C1—C31—C32—C33−176.67 (10)
N11—C1—C21—C22−123.14 (10)C31—C32—C33—C34−0.02 (18)
C31—C1—C21—C22111.29 (10)C32—C33—C34—F34−179.48 (10)
N11—C1—C21—C2656.95 (12)C32—C33—C34—C351.07 (19)
C31—C1—C21—C26−68.62 (12)F34—C34—C35—C36179.60 (10)
C26—C21—C22—C23−0.28 (16)C33—C34—C35—C36−0.95 (18)
C1—C21—C22—C23179.81 (10)C34—C35—C36—C31−0.22 (17)
C21—C22—C23—C240.28 (17)C32—C31—C36—C351.19 (17)
C22—C23—C24—F24179.68 (10)C1—C31—C36—C35176.98 (10)
D—H···AD—HH···AD···AD—H···A
C25—H25···F24i0.962 (14)2.424 (14)3.2720 (13)146.8 (10)
C25—H25···F34ii0.962 (14)2.533 (14)3.1998 (13)126.5 (10)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C25—H25⋯F24i 0.962 (14)2.424 (14)3.2720 (13)146.8 (10)
C25—H25⋯F34ii 0.962 (14)2.533 (14)3.1998 (13)126.5 (10)

Symmetry codes: (i) ; (ii) .

  5 in total

1.  Identification of new diamine scaffolds with activity against Mycobacterium tuberculosis.

Authors:  Elena Bogatcheva; Colleen Hanrahan; Boris Nikonenko; Rowena Samala; Ping Chen; Jacqueline Gearhart; Francis Barbosa; Leo Einck; Carol A Nacy; Marina Protopopova
Journal:  J Med Chem       Date:  2006-06-01       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Substituted piperazines as novel dipeptidyl peptidase IV inhibitors.

Authors:  Linda L Brockunier; Jiafang He; Lawrence F Colwell; Bahanu Habulihaz; Huaibing He; Barbara Leiting; Kathryn A Lyons; Frank Marsilio; Reshma A Patel; Yohannes Teffera; Joseph K Wu; Nancy A Thornberry; Ann E Weber; Emma R Parmee
Journal:  Bioorg Med Chem Lett       Date:  2004-09-20       Impact factor: 2.823

4.  4-[Bis(4-fluorophenyl)methyl]piperazin-1-ium picrate.

Authors:  Richard Betz; Thomas Gerber; Eric Hosten; Alaloor S Dayananda; Hemmige S Yathirajan; Badiadka Narayana
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-14

5.  4-[Bis(4-fluorophenyl)methyl]piperazin-1-ium 2-(2-phenylethyl)benzoate.

Authors:  Richard Betz; Thomas Gerber; Eric Hosten; Alaloor S Dayananda; Hemmige S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30
  5 in total
  1 in total

1.  4-[Bis(4-fluoro-phen-yl)meth-yl]-1-[(2E)-3-phenyl-prop-2-en-1-yl]piperazin-1-ium 3-carb-oxy-propano-ate.

Authors:  Channappa N Kavitha; Hemmige S Yathirajan; Badiadka Narayana; Thomas Gerber; Benjamin van Brecht; Richard Betz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-01-19
  1 in total

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