Literature DB >> 220604

Coupling between oxidation state and hydrogen bond conformation in heme proteins.

J S Valentine, R P Sheridan, L C Allen, P C Kahn.   

Abstract

In all heme proteins for which crystal structures are available, the N(epsilon) of a histidyl residue is bonded to the heme iron and N(delta) is hydrogen bonded to a carbonyl oxygen of the peptide backbone. We investigate here the possibility that a change in oxidation state of the iron or a change in the geometry of this hydrogen bond might change the hydrogen bond strength in a functionally significant way. Dimerization energies obtained from ab initio molecular orbital calculations on the hydrogen-bonded dimer of imidazole and planar formamide are used to represent the strength of this hydrogen bond in heme proteins. The effect of a change in iron oxidation state is modeled by varying the positive charge on imidazole. The effect of a change in hydrogen bond geometry is studied by employing x-ray coordinates for reduced and oxidized cytochrome c, deoxy- and metmyoglobin, and deoxy- and methemoglobin. Our conclusions are that the strength of this hydrogen bond in heme proteins is sensitive to both the oxidation state of the iron atom and to geometry changes on the order of those obtained from the x-ray coordinates. We speculate that the changes in oxidation state may be functionally coupled with changes in hydrogen bond geometry and that this hydrogen bond represents a feasible pathway to link protein conformation with redox potential or reactivity of the iron atom.

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Year:  1979        PMID: 220604      PMCID: PMC383176          DOI: 10.1073/pnas.76.3.1009

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  Reactions of oxygen with hemoglobin, cytochrome c oxidase and other hemeproteins.

Authors:  W S Caughey; C H Barlow; J C Maxwell; J A Volpe; W J Wallace
Journal:  Ann N Y Acad Sci       Date:  1975-04-15       Impact factor: 5.691

Review 2.  Structure and function of cytochromes c.

Authors:  F R Salemme
Journal:  Annu Rev Biochem       Date:  1977       Impact factor: 23.643

Review 3.  Cooperative interactions of hemoglobin.

Authors:  S J Edelstein
Journal:  Annu Rev Biochem       Date:  1975       Impact factor: 23.643

4.  Energy-structure correlation in metalloporphyrins and the control of oxygen binding by hemoglobin.

Authors:  A Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  1977-05       Impact factor: 11.205

5.  Mechanism of tertiary structural change in hemoglobin.

Authors:  B R Gelin; M Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  1977-03       Impact factor: 11.205

6.  Tuna cytochrome c at 2.0 A resolution. I. Ferricytochrome structure analysis.

Authors:  R Swanson; B L Trus; N Mandel; G Mandel; O B Kallai; R E Dickerson
Journal:  J Biol Chem       Date:  1977-01-25       Impact factor: 5.157

7.  Direct generation of superoxide anions by flash photolysis of human oxyhemoglobin.

Authors:  L S Demma; J M Salhany
Journal:  J Biol Chem       Date:  1977-02-25       Impact factor: 5.157

8.  Linear electric field effect in electron paramagnetic resonance for two bisimidazole--heme complexes, model compounds for B and H hemichromes of hemoglobin and for cytochrome b5.

Authors:  J Peisach; W B Mims
Journal:  Biochemistry       Date:  1977-06-14       Impact factor: 3.162

9.  Tuna cytochrome c at 2.0 A resolution. III. Coordinate optimization and comparison of structures.

Authors:  N Mandel; G Mandel; B L Trus; J Rosenberg; G Carlson; R E Dickerson
Journal:  J Biol Chem       Date:  1977-07-10       Impact factor: 5.157

10.  Tuna cytochrome c at 2.0 A resolution. II. Ferrocytochrome structure analysis.

Authors:  T Takano; B L Trus; N Mandel; G Mandel; O B Kallai; R Swanson; R E Dickerson
Journal:  J Biol Chem       Date:  1977-01-25       Impact factor: 5.157

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  18 in total

1.  Increasing the redox potential of isoform 1 of yeast cytochrome c through the modification of select haem interactions.

Authors:  C Marc Lett; J Guy Guillemette
Journal:  Biochem J       Date:  2002-03-01       Impact factor: 3.857

Review 2.  Heme enzyme structure and function.

Authors:  Thomas L Poulos
Journal:  Chem Rev       Date:  2014-01-08       Impact factor: 60.622

3.  Structural features promoting dioxygen production by Dechloromonas aromatica chlorite dismutase.

Authors:  Brandon R Goblirsch; Bennett R Streit; Jennifer L Dubois; Carrie M Wilmot
Journal:  J Biol Inorg Chem       Date:  2010-04-13       Impact factor: 3.358

4.  Ultrahigh (0.93A) resolution structure of manganese peroxidase from Phanerochaete chrysosporium: implications for the catalytic mechanism.

Authors:  Munirathinam Sundaramoorthy; Michael H Gold; Thomas L Poulos
Journal:  J Inorg Biochem       Date:  2010-03-06       Impact factor: 4.155

5.  All high-spin (S = 2) iron(ii) hemes are NOT alike.

Authors:  Chuanjiang Hu; Charles E Schulz; W Robert Scheidt
Journal:  Dalton Trans       Date:  2015-09-21       Impact factor: 4.390

6.  Protein-heme interaction in hemoglobin: evidence from Raman difference spectroscopy.

Authors:  J A Shelnutt; D L Rousseau; J M Friedman; S R Simon
Journal:  Proc Natl Acad Sci U S A       Date:  1979-09       Impact factor: 11.205

7.  An x-ray absorption study of the iron site in bacterial photosynthetic reaction centers.

Authors:  G Bunker; E A Stern; R E Blankenship; W W Parson
Journal:  Biophys J       Date:  1982-02       Impact factor: 4.033

8.  Hydrogen bonding influence of 1,10-phenanthroline on five-coordinate high-spin imidazole-ligated iron(II) porphyrinates.

Authors:  Chuanjiang Hu; Bruce C Noll; Charles E Schulz; W Robert Scheidt
Journal:  Inorg Chem       Date:  2008-09-11       Impact factor: 5.165

9.  Effects of imidazole deprotonation on vibrational spectra of high-spin iron(II) porphyrinates.

Authors:  Chuanjiang Hu; Qian Peng; Nathan J Silvernail; Alexander Barabanschikov; Jiyong Zhao; E Ercan Alp; Wolfgang Sturhahn; J Timothy Sage; W Robert Scheidt
Journal:  Inorg Chem       Date:  2013-03-07       Impact factor: 5.165

10.  Hydrogen bonding effects on the electronic configuration of five-coordinate high-spin iron(II) porphyrinates.

Authors:  Chuanjiang Hu; Bruce C Noll; Paula M B Piccoli; Arthur J Schultz; Charles E Schulz; W Robert Scheidt
Journal:  J Am Chem Soc       Date:  2008-02-14       Impact factor: 15.419

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