Literature DB >> 266703

Energy-structure correlation in metalloporphyrins and the control of oxygen binding by hemoglobin.

A Warshel.   

Abstract

The contribution of the porphyrin skeleton to the potential energy surface metalloporphyrins is calculated by the semiempirical method of quantum mechanical extension of the consistent force field to eta electron molecules. This calculation makes it possible to correlate the observed structure of metalloporphyrins with the strain energy of the porphyrin skeleton. It is found that the out-of-plane metal displacement in pentacoordinate heme systems is due to both the restricted size of the porphyrin hole and the "1-3" steric interaction between the axial ligand and the heme nitrogens. The main components of the active site of hemoglobin are simulated by a histidine-heme-oxygen system. The energy surface of this system provides a quantitative explanation for the control of ligand binding by hemoglobin. It is shown that the heme acts as a diaphragm, designed to provide simultaneous binding to the histidine and the sixth ligand under the steric requirements of the 1-3 interactions. The dependence of the hemoglobin potential surface on the distance between the proximal histidine and the heme plane is evaluated for the R and T states, using the calculated heme potential and the observed energy of heme-heme interaction.

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Year:  1977        PMID: 266703      PMCID: PMC431000          DOI: 10.1073/pnas.74.5.1789

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  17 in total

Review 1.  Structure and function of haemoglobin.

Authors:  J M Baldwin
Journal:  Prog Biophys Mol Biol       Date:  1975       Impact factor: 3.667

Review 2.  Interpretation of resonance Raman spectra of biological molecules.

Authors:  A Warshel
Journal:  Annu Rev Biophys Bioeng       Date:  1977

3.  Resonance Raman spectra of heme proteins. Effects of oxidation and spin state.

Authors:  T G Spiro; T C Strekas
Journal:  J Am Chem Soc       Date:  1974-01-23       Impact factor: 15.419

4.  Influence of globin structure on the state of the heme. 3. Changes in heme spectra accompanying allosteric transitions in methemoglobin and their implications for heme-heme interaction.

Authors:  M F Perutz; E J Heidner; J E Ladner; J G Beetlestone; C Ho; E F Slade
Journal:  Biochemistry       Date:  1974-05-07       Impact factor: 3.162

5.  Ferrous porphyrins in organic solvents. I. Preparation and coordinating properties.

Authors:  D Brault; M Rougee
Journal:  Biochemistry       Date:  1974-10-22       Impact factor: 3.162

6.  Calculation of pi-pi excited state conformations and vibronic structure of retinal and related molecules.

Authors:  A Warshel; M Karplus
Journal:  J Am Chem Soc       Date:  1974-09-04       Impact factor: 15.419

7.  Influence of globin structure on the state of the heme. I. Human deoxyhemoglobin.

Authors:  M F Perutz; J E Ladner; S R Simon; C Ho
Journal:  Biochemistry       Date:  1974-05-07       Impact factor: 3.162

8.  Binding of imidazole and 2-methylimidazole by hemes in organic solvents. Evidence for five-coordination.

Authors:  D Brault; M Rougee
Journal:  Biochem Biophys Res Commun       Date:  1974-04-08       Impact factor: 3.575

9.  High resolution nuclear magnetic resonance spectra of hemoglobin. 3. The half-ligated state and allosteric interactions.

Authors:  S Ogawa; R G Shulman
Journal:  J Mol Biol       Date:  1972-09-28       Impact factor: 5.469

10.  Stereochemistry of cooperative effects in haemoglobin.

Authors:  M F Perutz
Journal:  Nature       Date:  1970-11-21       Impact factor: 49.962

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  17 in total

1.  Coupling between oxidation state and hydrogen bond conformation in heme proteins.

Authors:  J S Valentine; R P Sheridan; L C Allen; P C Kahn
Journal:  Proc Natl Acad Sci U S A       Date:  1979-03       Impact factor: 11.205

2.  Picosecond study of the near infrared absorption band of hemoglobin after photolysis of carbonmonoxyhemoglobin.

Authors:  R C Dunn; J D Simon
Journal:  Biophys J       Date:  1991-10       Impact factor: 4.033

3.  A quantum-chemical picture of hemoglobin affinity.

Authors:  R E Alcantara; C Xu; T G Spiro; V Guallar
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-14       Impact factor: 11.205

4.  Detection of the heme perturbations caused by the quaternary R----T transition in oxyhemoglobin trout IV by resonance Raman scattering.

Authors:  R Schweitzer-Stenner; D Wedekind; W Dreybrodt
Journal:  Biophys J       Date:  1989-04       Impact factor: 4.033

5.  Charge stabilization mechanism in the visual and purple membrane pigments.

Authors:  A Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  1978-06       Impact factor: 11.205

6.  Metastable photoproducts from carbon monoxide myoglobin.

Authors:  D L Rousseau; P V Argade
Journal:  Proc Natl Acad Sci U S A       Date:  1986-03       Impact factor: 11.205

7.  Energetics of enzyme catalysis.

Authors:  A Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  1978-11       Impact factor: 11.205

8.  Semiempirical calculations of model deoxyheme. Variation of calculated electromagnetic properties with electronic configuration and distance of iron from the plane.

Authors:  G H Loew; R F Kirchner
Journal:  Biophys J       Date:  1978-05       Impact factor: 4.033

9.  Carboxy Mb at pH 3. Time-resolved resonance Raman study at cryogenic temperatures.

Authors:  I E Iben; B R Cowen; R Sanches; J M Friedman
Journal:  Biophys J       Date:  1991-04       Impact factor: 4.033

10.  Structural heterogeneity of the Fe(2+)-N epsilon (HisF8) bond in various hemoglobin and myoglobin derivatives probed by the Raman-active iron histidine stretching mode.

Authors:  H Gilch; R Schweitzer-Stenner; W Dreybrodt
Journal:  Biophys J       Date:  1993-10       Impact factor: 4.033

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