Literature DB >> 265575

Mechanism of tertiary structural change in hemoglobin.

B R Gelin, M Karplus.   

Abstract

A reaction path is presented by which the effects of oxygen binding in hemoglobin are transmitted from a heme group to the surface of its subunit. Starting from the known deoxy geometry, it is shown by calculations with empirical energy functions and comparisons with available data how the change in heme geometry on ligation introduces a perturbation that leads to the tertiary structural alterations essential for cooperatively. It is found that there is little strain on the unliganded heme; instead, the reduced oxygen affinity of hemoglobin results from the strain on the liganded subunit in a tetramer with the deoxy quarternary structure.

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Year:  1977        PMID: 265575      PMCID: PMC430479          DOI: 10.1073/pnas.74.3.801

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  23 in total

Review 1.  Allosteric interpretation of haemoglobin properties.

Authors:  R G Shulman; J J Hopfield; S Ogawa
Journal:  Q Rev Biophys       Date:  1975-07       Impact factor: 5.318

2.  ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL.

Authors:  J MONOD; J WYMAN; J P CHANGEUX
Journal:  J Mol Biol       Date:  1965-05       Impact factor: 5.469

3.  Sidechain torsional potentials and motion of amino acids in porteins: bovine pancreatic trypsin inhibitor.

Authors:  B R Gelin; M Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  1975-06       Impact factor: 11.205

4.  Influence of globin structure on the state of the heme. 3. Changes in heme spectra accompanying allosteric transitions in methemoglobin and their implications for heme-heme interaction.

Authors:  M F Perutz; E J Heidner; J E Ladner; J G Beetlestone; C Ho; E F Slade
Journal:  Biochemistry       Date:  1974-05-07       Impact factor: 3.162

5.  Optically detected conformational changes in haemoglobin single crystals.

Authors:  M W Makinen; W A Eaton
Journal:  Nature       Date:  1974-01-04       Impact factor: 49.962

6.  High resolution nuclear magnetic resonance spectra of hemoglobin. 3. The half-ligated state and allosteric interactions.

Authors:  S Ogawa; R G Shulman
Journal:  J Mol Biol       Date:  1972-09-28       Impact factor: 5.469

7.  Stereochemistry of cooperative effects in haemoglobin.

Authors:  M F Perutz
Journal:  Nature       Date:  1970-11-21       Impact factor: 49.962

8.  Influence of globin structures on the state of the heme. Ferrous low spin derivatives.

Authors:  M F Perutz; J V Kilmartin; K Nagai; A Szabo; S R Simon
Journal:  Biochemistry       Date:  1976-01-27       Impact factor: 3.162

9.  Stereochemistry of low-spin iron porphyrins. II. Bis(piperidine)- , , , -tetraphenylporphinatoiron(II).

Authors:  L J Radonovich; A Bloom; J L Hoard
Journal:  J Am Chem Soc       Date:  1972-03-22       Impact factor: 15.419

10.  Stereochemistry of hemes and other metalloporphyrins.

Authors:  J L Hoard
Journal:  Science       Date:  1971-12-24       Impact factor: 47.728

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  30 in total

1.  A new mode for heme-heme interactions in hemoglobin associated with distal perturbations.

Authors:  A Levy; V S Sharma; L Zhang; J M Rifkind
Journal:  Biophys J       Date:  1992-03       Impact factor: 4.033

2.  Coupling between oxidation state and hydrogen bond conformation in heme proteins.

Authors:  J S Valentine; R P Sheridan; L C Allen; P C Kahn
Journal:  Proc Natl Acad Sci U S A       Date:  1979-03       Impact factor: 11.205

3.  A quantum-chemical picture of hemoglobin affinity.

Authors:  R E Alcantara; C Xu; T G Spiro; V Guallar
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-14       Impact factor: 11.205

Review 4.  CHARMM: the biomolecular simulation program.

Authors:  B R Brooks; C L Brooks; A D Mackerell; L Nilsson; R J Petrella; B Roux; Y Won; G Archontis; C Bartels; S Boresch; A Caflisch; L Caves; Q Cui; A R Dinner; M Feig; S Fischer; J Gao; M Hodoscek; W Im; K Kuczera; T Lazaridis; J Ma; V Ovchinnikov; E Paci; R W Pastor; C B Post; J Z Pu; M Schaefer; B Tidor; R M Venable; H L Woodcock; X Wu; W Yang; D M York; M Karplus
Journal:  J Comput Chem       Date:  2009-07-30       Impact factor: 3.376

Review 5.  Metal Ion Modeling Using Classical Mechanics.

Authors:  Pengfei Li; Kenneth M Merz
Journal:  Chem Rev       Date:  2017-01-03       Impact factor: 60.622

Review 6.  Protein dynamics explain the allosteric behaviors of hemoglobin.

Authors:  Takashi Yonetani; Monique Laberge
Journal:  Biochim Biophys Acta       Date:  2008-05-08

7.  The binding characteristics of the cytochrome c iron.

Authors:  A Schejter; B Plotkin
Journal:  Biochem J       Date:  1988-10-01       Impact factor: 3.857

8.  Experiments on Hemoglobin in Single Crystals and Silica Gels Distinguish among Allosteric Models.

Authors:  Eric R Henry; Andrea Mozzarelli; Cristiano Viappiani; Stefania Abbruzzetti; Stefano Bettati; Luca Ronda; Stefano Bruno; William A Eaton
Journal:  Biophys J       Date:  2015-05-30       Impact factor: 4.033

9.  Detection of the heme perturbations caused by the quaternary R----T transition in oxyhemoglobin trout IV by resonance Raman scattering.

Authors:  R Schweitzer-Stenner; D Wedekind; W Dreybrodt
Journal:  Biophys J       Date:  1989-04       Impact factor: 4.033

10.  An abasic site in DNA. Solution conformation determined by proton NMR and molecular mechanics calculations.

Authors:  P Cuniasse; L C Sowers; R Eritja; B Kaplan; M F Goodman; J A Cognet; M LeBret; W Guschlbauer; G V Fazakerley
Journal:  Nucleic Acids Res       Date:  1987-10-12       Impact factor: 16.971

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