Literature DB >> 22059047

Benzyl (E)-3-(2-methyl-benzyl-idene)dithio-carbazate.

Shang Shan1, Zhao Wang, Yan-Lan Huang, Han-Qi Guo, Deng-Feng Li.   

Abstract

The title compound, C(16)H(16)N(2)S(2), was obtained from the condensation reaction of benzyl dithio-carbazate and 2-methyl-benzaldehyde. The asymmetric unit contains two independent mol-ecules. In both mol-ecules, the methyl-phenyl ring and the dithio-carbazate fragment are located on opposite sides of the C=N bond, showing an E conformation. In each mol-ecule, the dithio-carbazate fragment is approximately planar, the r.m.s deviations being 0.018 and 0.025 Å. The mean plane of dithio-carbazate group is oriented at dihedral angles of 7.9 (3) and 68.24 (12)°, respectively, to the methyl-phenyl and phenyl rings in one mol-ecule, while the corresponding angles in the other mol-ecule are 10.9 (3) and 69.76 (16)°. Inter-molecular N-H⋯S hydrogen bonding occurs in the crystal structure to generate inversion dimers for both molecules.

Entities:  

Year:  2011        PMID: 22059047      PMCID: PMC3200894          DOI: 10.1107/S1600536811033113

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For potential applications of hydrazone and its derivatives in the biological field, see: Okabe et al. (1993 ▶); Hu et al. (2001 ▶). For related structures, see: Shan et al. (2006 ▶, 2008a ▶,b ▶, 2011 ▶). For the synthesis, see: Hu et al. (2001 ▶).

Experimental

Crystal data

C16H16N2S2 M = 300.43 Monoclinic, a = 21.976 (7) Å b = 6.126 (3) Å c = 23.099 (6) Å β = 90.840 (4)° V = 3109 (2) Å3 Z = 8 Mo Kα radiation μ = 0.33 mm−1 T = 294 K 0.29 × 0.23 × 0.18 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.85, T max = 0.93 11281 measured reflections 5596 independent reflections 2739 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.065 wR(F 2) = 0.162 S = 1.02 5596 reflections 363 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.19 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO (Rigaku, 1998 ▶); data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811033113/xu5276sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811033113/xu5276Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811033113/xu5276Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H16N2S2F(000) = 1264
Mr = 300.43Dx = 1.284 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5596 reflections
a = 21.976 (7) Åθ = 3.3–25.2°
b = 6.126 (3) ŵ = 0.33 mm1
c = 23.099 (6) ÅT = 294 K
β = 90.840 (4)°Block, yellow
V = 3109 (2) Å30.29 × 0.23 × 0.18 mm
Z = 8
Rigaku R-AXIS RAPID IP diffractometer5596 independent reflections
Radiation source: fine-focus sealed tube2739 reflections with I > 2σ(I)
graphiteRint = 0.055
Detector resolution: 10.0 pixels mm-1θmax = 25.2°, θmin = 3.4°
ω scansh = −25→26
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −6→7
Tmin = 0.85, Tmax = 0.93l = −18→27
11281 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.162H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0432P)2] where P = (Fo2 + 2Fc2)/3
5596 reflections(Δ/σ)max = 0.001
363 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.00768 (5)0.7325 (2)0.57333 (6)0.0829 (5)
S20.12246 (5)0.58916 (18)0.63604 (5)0.0611 (4)
S30.42020 (6)0.2494 (2)0.49716 (6)0.0866 (5)
S40.35943 (5)0.34105 (19)0.38154 (6)0.0652 (4)
N10.12405 (14)0.2604 (6)0.55431 (16)0.0584 (10)
N20.07408 (15)0.3932 (6)0.54827 (17)0.0663 (11)
H2N0.04740.36560.52170.080*
N30.44164 (15)0.6850 (6)0.37635 (17)0.0599 (10)
N40.44538 (15)0.5710 (6)0.42774 (18)0.0686 (11)
H4N0.47020.61450.45440.082*
C10.17913 (18)−0.0439 (6)0.51748 (19)0.0538 (11)
C20.1794 (2)−0.2255 (8)0.4810 (2)0.0660 (12)
C30.2286 (3)−0.3619 (9)0.4846 (3)0.0940 (18)
H30.2294−0.48470.46100.113*
C40.2768 (3)−0.3257 (9)0.5215 (3)0.0915 (18)
H40.3094−0.42230.52280.110*
C50.2763 (2)−0.1464 (9)0.5561 (2)0.0819 (16)
H50.3091−0.11900.58100.098*
C60.22812 (18)−0.0064 (7)0.5549 (2)0.0667 (13)
H60.22800.11480.57910.080*
C70.12811 (18)0.1054 (7)0.5170 (2)0.0583 (12)
H70.09760.08890.48900.070*
C80.1282 (2)−0.2723 (8)0.4390 (2)0.0920 (18)
H8A0.1301−0.17260.40710.138*
H8B0.0900−0.25500.45820.138*
H8C0.1316−0.41930.42510.138*
C90.06632 (17)0.5648 (6)0.58315 (19)0.0535 (11)
C100.0965 (2)0.8266 (7)0.6743 (2)0.0695 (14)
H10A0.09800.95320.64920.083*
H10B0.05470.80560.68600.083*
C110.13608 (16)0.8637 (7)0.72670 (19)0.0491 (10)
C120.17184 (18)1.0460 (7)0.7309 (2)0.0603 (12)
H120.17291.14400.70020.072*
C130.2064 (2)1.0868 (8)0.7802 (3)0.0735 (15)
H130.23001.21260.78280.088*
C140.2058 (2)0.9446 (9)0.8243 (2)0.0819 (16)
H140.22940.97050.85740.098*
C150.1703 (2)0.7607 (9)0.8206 (2)0.0826 (15)
H150.16990.66130.85100.099*
C160.13541 (19)0.7239 (7)0.7718 (2)0.0659 (13)
H160.11090.60040.76980.079*
C170.48183 (18)0.9804 (7)0.3223 (2)0.0614 (13)
C180.51708 (19)1.1720 (8)0.3223 (3)0.0715 (14)
C190.5172 (2)1.2945 (8)0.2726 (3)0.0870 (18)
H190.53991.42270.27230.104*
C200.4858 (3)1.2379 (11)0.2236 (3)0.108 (2)
H200.48711.32640.19090.130*
C210.4525 (2)1.0512 (10)0.2228 (3)0.102 (2)
H210.43161.00900.18930.123*
C220.4500 (2)0.9238 (8)0.2725 (2)0.0798 (15)
H220.42630.79800.27230.096*
C230.4788 (2)0.8437 (7)0.3726 (2)0.0664 (14)
H230.50490.87230.40380.080*
C240.5559 (2)1.2373 (8)0.3736 (3)0.097 (2)
H24A0.58881.13520.37830.145*
H24B0.53171.23750.40780.145*
H24C0.57211.38080.36730.145*
C250.41069 (17)0.3917 (7)0.43703 (19)0.0565 (12)
C260.31883 (18)0.1063 (7)0.4079 (2)0.0691 (14)
H26A0.3464−0.01660.41190.083*
H26B0.30220.13800.44570.083*
C270.26839 (18)0.0506 (7)0.3661 (2)0.0606 (12)
C280.2196 (2)0.1840 (9)0.3593 (3)0.103 (2)
H280.21760.31120.38110.123*
C290.1729 (3)0.1357 (12)0.3207 (3)0.120 (3)
H290.14000.23010.31680.144*
C300.1750 (3)−0.0472 (11)0.2887 (3)0.0939 (18)
H300.1434−0.08170.26310.113*
C310.2229 (3)−0.1785 (8)0.2943 (2)0.0888 (17)
H310.2249−0.30450.27190.107*
C320.2703 (2)−0.1306 (8)0.3329 (2)0.0776 (15)
H320.3035−0.22430.33590.093*
U11U22U33U12U13U23
S10.0705 (8)0.0936 (9)0.0833 (11)0.0323 (7)−0.0394 (8)−0.0285 (8)
S20.0568 (6)0.0694 (8)0.0564 (8)0.0151 (6)−0.0207 (6)−0.0124 (6)
S30.0834 (8)0.1052 (11)0.0703 (10)−0.0175 (8)−0.0289 (8)0.0303 (8)
S40.0670 (7)0.0727 (8)0.0554 (8)0.0018 (6)−0.0150 (6)0.0100 (6)
N10.0523 (19)0.061 (2)0.061 (3)0.0101 (18)−0.0145 (19)−0.003 (2)
N20.060 (2)0.069 (2)0.070 (3)0.0154 (19)−0.027 (2)−0.017 (2)
N30.065 (2)0.058 (2)0.056 (3)−0.0019 (19)−0.0104 (19)0.015 (2)
N40.066 (2)0.076 (3)0.063 (3)−0.003 (2)−0.016 (2)0.007 (2)
C10.062 (2)0.050 (2)0.049 (3)0.013 (2)−0.005 (2)0.001 (2)
C20.078 (3)0.075 (3)0.044 (3)0.010 (3)0.001 (2)−0.007 (3)
C30.116 (4)0.086 (4)0.080 (5)0.032 (4)0.005 (4)−0.026 (3)
C40.096 (4)0.093 (4)0.086 (5)0.034 (3)0.005 (4)−0.013 (4)
C50.067 (3)0.098 (4)0.080 (4)0.016 (3)−0.015 (3)0.001 (3)
C60.063 (3)0.071 (3)0.065 (4)0.012 (2)−0.018 (2)−0.011 (2)
C70.064 (3)0.059 (3)0.052 (3)0.002 (2)−0.014 (2)−0.006 (2)
C80.116 (4)0.096 (4)0.063 (4)0.005 (3)−0.027 (3)−0.026 (3)
C90.053 (2)0.059 (3)0.047 (3)0.009 (2)−0.016 (2)−0.005 (2)
C100.072 (3)0.075 (3)0.061 (3)0.019 (2)−0.025 (3)−0.021 (3)
C110.047 (2)0.053 (2)0.047 (3)0.002 (2)−0.004 (2)0.001 (2)
C120.066 (3)0.055 (3)0.060 (3)0.004 (2)0.003 (2)0.007 (2)
C130.066 (3)0.065 (3)0.088 (4)−0.008 (3)−0.011 (3)−0.016 (3)
C140.079 (3)0.094 (4)0.071 (4)0.003 (3)−0.022 (3)−0.020 (3)
C150.098 (4)0.087 (4)0.062 (4)0.002 (3)−0.009 (3)0.016 (3)
C160.065 (3)0.070 (3)0.063 (3)−0.017 (2)−0.013 (3)0.003 (3)
C170.057 (2)0.058 (3)0.069 (4)0.009 (2)−0.007 (2)0.009 (3)
C180.047 (2)0.065 (3)0.103 (5)0.000 (2)0.016 (3)0.005 (3)
C190.063 (3)0.070 (4)0.130 (6)−0.013 (3)0.022 (3)0.020 (4)
C200.092 (4)0.117 (5)0.116 (6)−0.018 (4)0.007 (4)0.042 (4)
C210.103 (4)0.124 (5)0.079 (5)−0.027 (4)−0.019 (4)0.028 (4)
C220.088 (3)0.078 (3)0.072 (4)−0.016 (3)−0.009 (3)0.014 (3)
C230.061 (3)0.063 (3)0.074 (4)0.002 (2)−0.017 (3)0.001 (3)
C240.066 (3)0.084 (4)0.141 (6)−0.013 (3)−0.001 (4)−0.021 (4)
C250.050 (2)0.062 (3)0.057 (3)0.010 (2)−0.007 (2)0.008 (2)
C260.065 (3)0.072 (3)0.071 (4)−0.003 (2)−0.012 (3)0.016 (3)
C270.059 (2)0.061 (3)0.062 (3)0.006 (2)−0.011 (2)0.003 (3)
C280.102 (4)0.112 (4)0.093 (5)0.044 (4)−0.046 (4)−0.045 (4)
C290.097 (4)0.151 (6)0.111 (6)0.044 (4)−0.053 (4)−0.036 (5)
C300.082 (4)0.123 (5)0.076 (5)−0.013 (4)−0.013 (3)−0.007 (4)
C310.120 (4)0.069 (3)0.077 (4)−0.016 (3)−0.006 (4)−0.024 (3)
C320.086 (3)0.061 (3)0.085 (4)0.008 (3)0.000 (3)0.000 (3)
S1—C91.661 (4)C13—C141.341 (7)
S2—C91.730 (4)C13—H130.9300
S2—C101.800 (4)C14—C151.372 (6)
S3—C251.651 (4)C14—H140.9300
S4—C251.722 (4)C15—C161.372 (6)
S4—C261.803 (4)C15—H150.9300
N1—C71.287 (5)C16—H160.9300
N1—N21.372 (4)C17—C221.381 (6)
N2—C91.337 (5)C17—C181.406 (6)
N2—H2N0.8600C17—C231.436 (6)
N3—C231.273 (5)C18—C191.372 (7)
N3—N41.378 (5)C18—C241.503 (7)
N4—C251.356 (5)C19—C201.362 (7)
N4—H4N0.8600C19—H190.9300
C1—C61.390 (5)C20—C211.357 (7)
C1—C21.396 (6)C20—H200.9300
C1—C71.447 (5)C21—C221.391 (7)
C2—C31.370 (6)C21—H210.9300
C2—C81.502 (5)C22—H220.9300
C3—C41.366 (6)C23—H230.9300
C3—H30.9300C24—H24A0.9600
C4—C51.360 (7)C24—H24B0.9600
C4—H40.9300C24—H24C0.9600
C5—C61.362 (6)C26—C271.500 (5)
C5—H50.9300C26—H26A0.9700
C6—H60.9300C26—H26B0.9700
C7—H70.9300C27—C321.350 (6)
C8—H8A0.9600C27—C281.355 (6)
C8—H8B0.9600C28—C291.383 (6)
C8—H8C0.9600C28—H280.9300
C10—C111.497 (5)C29—C301.343 (7)
C10—H10A0.9700C29—H290.9300
C10—H10B0.9700C30—C311.330 (7)
C11—C161.350 (6)C30—H300.9300
C11—C121.368 (5)C31—C321.391 (6)
C12—C131.381 (6)C31—H310.9300
C12—H120.9300C32—H320.9300
C9—S2—C10100.88 (18)C14—C15—H15120.1
C25—S4—C26102.3 (2)C16—C15—H15120.1
C7—N1—N2115.6 (3)C11—C16—C15121.2 (4)
C9—N2—N1120.9 (3)C11—C16—H16119.4
C9—N2—H2N119.5C15—C16—H16119.4
N1—N2—H2N119.5C22—C17—C18118.9 (5)
C23—N3—N4114.5 (4)C22—C17—C23119.9 (4)
C25—N4—N3121.3 (3)C18—C17—C23121.2 (4)
C25—N4—H4N119.3C19—C18—C17117.6 (5)
N3—N4—H4N119.3C19—C18—C24120.4 (5)
C6—C1—C2119.9 (4)C17—C18—C24121.9 (5)
C6—C1—C7119.6 (4)C20—C19—C18123.3 (5)
C2—C1—C7120.6 (4)C20—C19—H19118.4
C3—C2—C1117.3 (4)C18—C19—H19118.4
C3—C2—C8120.5 (5)C21—C20—C19119.5 (6)
C1—C2—C8122.2 (4)C21—C20—H20120.2
C4—C3—C2122.9 (5)C19—C20—H20120.2
C4—C3—H3118.5C20—C21—C22119.3 (5)
C2—C3—H3118.5C20—C21—H21120.4
C5—C4—C3119.0 (5)C22—C21—H21120.4
C5—C4—H4120.5C17—C22—C21121.4 (5)
C3—C4—H4120.5C17—C22—H22119.3
C4—C5—C6120.6 (5)C21—C22—H22119.3
C4—C5—H5119.7N3—C23—C17122.5 (4)
C6—C5—H5119.7N3—C23—H23118.7
C5—C6—C1120.2 (4)C17—C23—H23118.7
C5—C6—H6119.9C18—C24—H24A109.5
C1—C6—H6119.9C18—C24—H24B109.5
N1—C7—C1121.5 (4)H24A—C24—H24B109.5
N1—C7—H7119.3C18—C24—H24C109.5
C1—C7—H7119.3H24A—C24—H24C109.5
C2—C8—H8A109.5H24B—C24—H24C109.5
C2—C8—H8B109.5N4—C25—S3119.8 (3)
H8A—C8—H8B109.5N4—C25—S4113.0 (3)
C2—C8—H8C109.5S3—C25—S4127.2 (3)
H8A—C8—H8C109.5C27—C26—S4109.2 (3)
H8B—C8—H8C109.5C27—C26—H26A109.8
N2—C9—S1120.6 (3)S4—C26—H26A109.8
N2—C9—S2113.4 (3)C27—C26—H26B109.8
S1—C9—S2126.0 (3)S4—C26—H26B109.8
C11—C10—S2109.6 (3)H26A—C26—H26B108.3
C11—C10—H10A109.8C32—C27—C28117.4 (4)
S2—C10—H10A109.8C32—C27—C26121.7 (4)
C11—C10—H10B109.8C28—C27—C26120.9 (4)
S2—C10—H10B109.8C27—C28—C29121.6 (5)
H10A—C10—H10B108.2C27—C28—H28119.2
C16—C11—C12118.4 (4)C29—C28—H28119.2
C16—C11—C10121.0 (4)C30—C29—C28120.1 (5)
C12—C11—C10120.5 (4)C30—C29—H29119.9
C11—C12—C13121.0 (4)C28—C29—H29119.9
C11—C12—H12119.5C31—C30—C29119.0 (5)
C13—C12—H12119.5C31—C30—H30120.5
C14—C13—C12119.8 (4)C29—C30—H30120.5
C14—C13—H13120.1C30—C31—C32121.2 (5)
C12—C13—H13120.1C30—C31—H31119.4
C13—C14—C15119.8 (5)C32—C31—H31119.4
C13—C14—H14120.1C27—C32—C31120.6 (5)
C15—C14—H14120.1C27—C32—H32119.7
C14—C15—C16119.8 (5)C31—C32—H32119.7
D—H···AD—HH···AD···AD—H···A
N2—H2N···S1i0.862.563.400 (4)165
N4—H4N···S3ii0.862.773.577 (4)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2N⋯S1i0.862.563.400 (4)165
N4—H4N⋯S3ii0.862.773.577 (4)157

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Benzyl 3-[(E)-benzyl-idene]dithio-carbazate.

Authors:  Shang Shan; Yu-Liang Tian; Shan-Heng Wang; Wen-Long Wang; Ying-Li Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-07

3.  Benzyl 3-[(E)-furfuryl-idene]dithio-carbazate.

Authors:  Shang Shan; Yu-Liang Tian; Shan-Heng Wang; Wen-Long Wang; Ying-Li Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-10

4.  (E)-N'-[1-(Thio-phen-2-yl)ethyl-idene]benzohydrazide.

Authors:  Shang Shan; Yan-Lan Huang; Han-Qi Guo; Deng-Feng Li; Jian Sun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27
  4 in total
  2 in total

1.  (E)-N'-[1-(Thio-phen-2-yl)ethyl-idene]benzohydrazide.

Authors:  Shang Shan; Yan-Lan Huang; Han-Qi Guo; Deng-Feng Li; Jian Sun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27

2.  Crystal structure of benzyl N'-[(1E,4E)-1,5-bis-(4-meth-oxy-phen-yl)penta-1,4-dien-3-yl-idene]hydrazine-1-carbodi-thio-ate.

Authors:  Nabeel Arif Tawfeeq; Huey Chong Kwong; Mohamed Ibrahim Mohamed Tahir; Thahira B S A Ravoof
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2019-10-03
  2 in total

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