Literature DB >> 22059048

(E)-N'-[1-(Thio-phen-2-yl)ethyl-idene]benzohydrazide.

Shang Shan1, Yan-Lan Huang, Han-Qi Guo, Deng-Feng Li, Jian Sun.   

Abstract

The title compound, C(13)H(12)N(2)OS, was obtained from the condensation reaction of 2-acetyl-thio-phene and benzohydrazide. In the mol-ecule, the formohydrazide fragment is approximately planar (r.m.s deviation = 0.0146 Å) and the mean plane is oriented at dihedral angles of 24.47 (11) and 28.86 (13)°, respectively, to the phenyl and thio-phene rings. The thio-phene and phenyl rings make a dihedral angle of 53.21 (8)°. The benzamide fragment and thio-phene ring are located on the opposite sides of the C=N bond, showing an E conformation. Classical inter-molecular N-H⋯O hydrogen bonds and weak C-H⋯O inter-actions are present in the crystal structure: three such bonds occur to the same O-atom acceptor.

Entities:  

Year:  2011        PMID: 22059048      PMCID: PMC3200815          DOI: 10.1107/S1600536811033101

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of hydrazone derivatives in the biological field, see: Okabe et al. (1993 ▶). For general background to this work, see: Qiang et al. (2007 ▶). For a related structures, see: Xia et al. (2009 ▶); Shan et al. (2011 ▶)

Experimental

Crystal data

C13H12N2OS M = 244.31 Orthorhombic, a = 9.906 (3) Å b = 10.542 (5) Å c = 22.870 (5) Å V = 2388.3 (14) Å3 Z = 8 Mo Kα radiation μ = 0.26 mm−1 T = 294 K 0.32 × 0.29 × 0.28 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer 7859 measured reflections 2153 independent reflections 1552 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.101 S = 1.03 2153 reflections 155 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.17 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811033101/xu6116sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811033101/xu6116Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811033101/xu6116Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H12N2OSF(000) = 1024
Mr = 244.31Dx = 1.359 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 2153 reflections
a = 9.906 (3) Åθ = 3.3–25.2°
b = 10.542 (5) ŵ = 0.26 mm1
c = 22.870 (5) ÅT = 294 K
V = 2388.3 (14) Å3Block, yellow
Z = 80.32 × 0.29 × 0.28 mm
Rigaku R-AXIS RAPID IP diffractometer1552 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.036
graphiteθmax = 25.2°, θmin = 3.3°
Detector resolution: 10.0 pixels mm-1h = −10→11
ω scansk = −11→12
7859 measured reflectionsl = −27→23
2153 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.101H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0465P)2 + 0.4798P] where P = (Fo2 + 2Fc2)/3
2153 reflections(Δ/σ)max = 0.001
155 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.61206 (5)0.31374 (5)0.02223 (3)0.0507 (2)
N10.30582 (15)0.50999 (16)0.12073 (8)0.0425 (5)
H10.30950.58950.12900.051*
N20.41317 (15)0.45043 (16)0.09296 (8)0.0422 (4)
O10.19122 (15)0.32660 (14)0.12656 (9)0.0679 (5)
C10.08229 (18)0.51074 (18)0.16290 (10)0.0376 (5)
C20.0570 (2)0.6393 (2)0.15591 (10)0.0462 (6)
H20.11260.68810.13210.055*
C3−0.0508 (2)0.6949 (2)0.18432 (11)0.0549 (6)
H3−0.06750.78100.17940.066*
C4−0.1335 (2)0.6245 (3)0.21977 (11)0.0583 (7)
H4−0.20500.66290.23930.070*
C5−0.1101 (2)0.4972 (2)0.22631 (12)0.0606 (7)
H5−0.16640.44900.25010.073*
C6−0.0040 (2)0.4405 (2)0.19801 (10)0.0495 (6)
H60.01030.35380.20240.059*
C70.19588 (19)0.4411 (2)0.13447 (10)0.0423 (5)
C80.5283 (2)0.50629 (18)0.09602 (10)0.0377 (5)
C90.63941 (18)0.44513 (18)0.06501 (9)0.0377 (5)
C100.7727 (2)0.4768 (2)0.06465 (11)0.0488 (6)
H100.80800.54510.08530.059*
C110.8514 (2)0.3953 (2)0.02980 (11)0.0549 (7)
H110.94410.40430.02490.066*
C120.7782 (2)0.3029 (2)0.00428 (11)0.0509 (6)
H120.81410.2409−0.02010.061*
C130.5569 (2)0.6255 (2)0.12900 (11)0.0523 (6)
H13A0.50230.69300.11370.078*
H13B0.65060.64710.12490.078*
H13C0.53620.61300.16960.078*
U11U22U33U12U13U23
S10.0387 (3)0.0543 (4)0.0590 (4)−0.0030 (3)−0.0008 (3)−0.0143 (3)
N10.0321 (9)0.0425 (9)0.0529 (13)0.0001 (8)0.0042 (8)−0.0043 (8)
N20.0328 (9)0.0455 (9)0.0484 (12)0.0030 (8)0.0026 (8)−0.0031 (8)
O10.0465 (9)0.0458 (9)0.1112 (16)−0.0032 (7)0.0204 (9)−0.0110 (9)
C10.0319 (10)0.0441 (11)0.0368 (13)−0.0032 (9)−0.0021 (9)−0.0031 (9)
C20.0422 (12)0.0472 (12)0.0491 (16)−0.0032 (10)0.0022 (11)0.0017 (10)
C30.0555 (14)0.0501 (13)0.0591 (17)0.0100 (11)0.0014 (12)−0.0064 (12)
C40.0485 (13)0.0730 (17)0.0533 (17)0.0060 (13)0.0099 (12)−0.0136 (13)
C50.0592 (15)0.0688 (16)0.0538 (18)−0.0099 (13)0.0207 (13)−0.0064 (12)
C60.0537 (13)0.0479 (12)0.0470 (15)−0.0034 (11)0.0064 (11)−0.0016 (11)
C70.0344 (11)0.0441 (12)0.0485 (15)−0.0015 (10)−0.0023 (10)−0.0020 (10)
C80.0345 (10)0.0393 (10)0.0392 (13)0.0005 (9)−0.0022 (10)0.0023 (9)
C90.0346 (10)0.0382 (10)0.0402 (13)0.0003 (9)−0.0007 (9)0.0029 (9)
C100.0375 (11)0.0448 (12)0.0641 (17)−0.0057 (10)0.0032 (11)−0.0064 (11)
C110.0354 (11)0.0549 (13)0.0744 (19)0.0005 (10)0.0097 (12)−0.0043 (13)
C120.0437 (12)0.0548 (14)0.0542 (16)0.0068 (11)0.0061 (11)−0.0068 (12)
C130.0389 (11)0.0533 (13)0.0646 (18)−0.0006 (10)0.0028 (11)−0.0126 (12)
S1—C121.700 (2)C4—H40.9300
S1—C91.717 (2)C5—C61.371 (3)
N1—C71.346 (2)C5—H50.9300
N1—N21.389 (2)C6—H60.9300
N1—H10.8600C8—C91.459 (3)
N2—C81.286 (2)C8—C131.493 (3)
O1—C71.222 (2)C9—C101.361 (3)
C1—C61.387 (3)C10—C111.407 (3)
C1—C21.388 (3)C10—H100.9300
C1—C71.492 (3)C11—C121.347 (3)
C2—C31.380 (3)C11—H110.9300
C2—H20.9300C12—H120.9300
C3—C41.371 (3)C13—H13A0.9600
C3—H30.9300C13—H13B0.9600
C4—C51.370 (3)C13—H13C0.9600
C12—S1—C992.23 (10)O1—C7—C1121.45 (18)
C7—N1—N2118.85 (17)N1—C7—C1116.53 (18)
C7—N1—H1120.6N2—C8—C9116.11 (18)
N2—N1—H1120.6N2—C8—C13125.55 (19)
C8—N2—N1116.57 (17)C9—C8—C13118.34 (17)
C6—C1—C2118.51 (19)C10—C9—C8128.73 (19)
C6—C1—C7117.01 (18)C10—C9—S1110.31 (16)
C2—C1—C7124.48 (19)C8—C9—S1120.95 (14)
C3—C2—C1120.0 (2)C9—C10—C11113.0 (2)
C3—C2—H2120.0C9—C10—H10123.5
C1—C2—H2120.0C11—C10—H10123.5
C4—C3—C2120.7 (2)C12—C11—C10112.8 (2)
C4—C3—H3119.6C12—C11—H11123.6
C2—C3—H3119.6C10—C11—H11123.6
C5—C4—C3119.6 (2)C11—C12—S1111.59 (17)
C5—C4—H4120.2C11—C12—H12124.2
C3—C4—H4120.2S1—C12—H12124.2
C4—C5—C6120.3 (2)C8—C13—H13A109.5
C4—C5—H5119.8C8—C13—H13B109.5
C6—C5—H5119.8H13A—C13—H13B109.5
C5—C6—C1120.8 (2)C8—C13—H13C109.5
C5—C6—H6119.6H13A—C13—H13C109.5
C1—C6—H6119.6H13B—C13—H13C109.5
O1—C7—N1121.93 (19)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.862.503.340 (3)166
C2—H2···O1i0.932.433.251 (3)147
C13—H13A···O1i0.962.403.246 (3)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.862.503.340 (3)166
C2—H2⋯O1i0.932.433.251 (3)147
C13—H13A⋯O1i0.962.403.246 (3)147

Symmetry code: (i) .

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