Literature DB >> 22058938

N'-[(E)-2-Hy-droxy-3,5-diiodo-benzyl-idene]pyridine-3-carbohydrazide.

A Thirugnanasundar, J Suresh, A Ramu, G Rajagopal.   

Abstract

In the title compound, C(13)H(9)I(2)N(3)O(2), the dihedral angle between the two aromatic rings is 10.5 (2)°. The mol-ecule displays a trans configuration with respect to the C=N bond. An intra-molecular O-H⋯N hydrogen bond occurs. The crystal packing is stabilized by N-H⋯O and C-H⋯O n class="Chemical">hydrogen bonds.

Entities:  

Year:  2011        PMID: 22058938      PMCID: PMC3200631          DOI: 10.1107/S160053681103176X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of isoniazid derivatives, see: Janin (2007 ▶); Kahwa et al. (1986 ▶); Chen et al. (1997 ▶); n class="Gene">Ren et al. (2002 ▶). For a related structure, see: Zhi & Wang (2010 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C13H9I2N3O2 M = 493.03 Monoclinic, a = 17.4800 (5) Å b = 8.5710 (4) Å c = 9.8650 (3) Å β = 90.451 (4)° V = 1477.94 (9) Å3 Z = 4 Mo Kα radiation μ = 4.26 mm−1 T = 293 K 0.25 × 0.22 × 0.19 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.359, T max = 0.445 19735 measured reflections 4866 independent reflections 3640 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.106 S = 0.99 4866 reflections 183 parameters H-atom parameters constrained Δρmax = 1.68 e Å−3 Δρmin = −1.17 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681103176X/bt5587sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681103176X/bt5587Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681103176X/bt5587Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H9I2N3O2F(000) = 920
Mr = 493.03Dx = 2.216 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4867 reflections
a = 17.4800 (5) Åθ = 1.2–31.6°
b = 8.5710 (4) ŵ = 4.26 mm1
c = 9.8650 (3) ÅT = 293 K
β = 90.451 (4)°Block, white
V = 1477.94 (9) Å30.25 × 0.22 × 0.19 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer4866 independent reflections
Radiation source: fine-focus sealed tube3640 reflections with I > 2σ(I)
graphiteRint = 0.024
ω and φ scansθmax = 31.6°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −25→25
Tmin = 0.359, Tmax = 0.445k = −12→12
19735 measured reflectionsl = −14→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H-atom parameters constrained
wR(F2) = 0.106w = 1/[σ2(Fo2) + (0.0525P)2 + 1.9568P] where P = (Fo2 + 2Fc2)/3
S = 0.99(Δ/σ)max = 0.001
4866 reflectionsΔρmax = 1.68 e Å3
183 parametersΔρmin = −1.17 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0015 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.28906 (18)0.3439 (4)0.7602 (3)0.0383 (7)
H10.27130.28190.68920.046*
C20.36332 (17)0.3990 (4)0.7591 (3)0.0364 (6)
C30.39014 (17)0.4933 (4)0.8622 (3)0.0367 (6)
H30.43970.53280.85980.044*
C40.34258 (17)0.5285 (4)0.9691 (3)0.0371 (6)
C50.26788 (16)0.4720 (4)0.9750 (3)0.0347 (6)
C60.24076 (16)0.3806 (4)0.8670 (3)0.0343 (6)
C70.16298 (17)0.3211 (4)0.8627 (3)0.0381 (7)
H70.14590.26450.78800.046*
C80.00141 (15)0.2795 (4)1.0619 (3)0.0347 (6)
C9−0.07420 (15)0.2011 (4)1.0435 (3)0.0338 (6)
C10−0.13285 (18)0.2377 (5)1.1314 (4)0.0491 (9)
H10−0.12590.31251.19870.059*
C11−0.2021 (2)0.1607 (5)1.1169 (4)0.0559 (10)
H11−0.24250.18191.17480.067*
C12−0.2097 (2)0.0528 (5)1.0153 (4)0.0548 (9)
H12−0.25690.00431.00460.066*
C13−0.08758 (17)0.0874 (4)0.9470 (3)0.0419 (7)
H13−0.04770.06120.88940.050*
N10.11794 (15)0.3469 (3)0.9622 (3)0.0394 (6)
N20.04524 (14)0.2851 (4)0.9506 (3)0.0385 (6)
H20.02840.25110.87400.046*
N3−0.15404 (18)0.0128 (4)0.9311 (4)0.0546 (8)
O10.22488 (13)0.5069 (3)1.0828 (2)0.0458 (6)
H1A0.18160.47221.07140.069*
O20.02167 (13)0.3328 (3)1.1712 (2)0.0481 (6)
I10.434960 (14)0.34479 (3)0.59728 (3)0.05286 (10)
I20.385470 (15)0.66245 (4)1.12850 (3)0.06771 (12)
U11U22U33U12U13U23
C10.0354 (14)0.0453 (18)0.0344 (15)−0.0064 (12)0.0072 (11)−0.0015 (12)
C20.0329 (13)0.0427 (17)0.0336 (14)−0.0020 (12)0.0085 (11)0.0027 (12)
C30.0273 (12)0.0402 (17)0.0425 (16)−0.0042 (11)0.0051 (11)0.0005 (13)
C40.0312 (13)0.0416 (17)0.0384 (15)−0.0028 (11)0.0036 (11)−0.0044 (12)
C50.0301 (12)0.0424 (17)0.0318 (14)−0.0012 (11)0.0050 (10)0.0014 (12)
C60.0268 (12)0.0439 (17)0.0324 (14)−0.0055 (11)0.0042 (10)0.0026 (12)
C70.0304 (13)0.0504 (19)0.0336 (14)−0.0077 (12)0.0035 (11)−0.0011 (13)
C80.0278 (12)0.0457 (17)0.0306 (13)−0.0019 (11)0.0026 (10)0.0022 (12)
C90.0260 (12)0.0463 (16)0.0291 (13)−0.0010 (11)0.0023 (10)0.0072 (12)
C100.0318 (14)0.075 (3)0.0405 (17)−0.0020 (15)0.0078 (12)−0.0049 (17)
C110.0305 (15)0.083 (3)0.054 (2)−0.0024 (16)0.0129 (14)0.0105 (19)
C120.0334 (16)0.065 (2)0.066 (2)−0.0117 (15)0.0036 (15)0.010 (2)
C130.0314 (14)0.053 (2)0.0412 (17)−0.0026 (13)0.0049 (12)0.0016 (14)
N10.0289 (11)0.0539 (17)0.0354 (13)−0.0087 (10)0.0033 (10)0.0044 (11)
N20.0276 (11)0.0598 (17)0.0280 (11)−0.0081 (11)0.0039 (9)0.0021 (11)
N30.0393 (15)0.060 (2)0.065 (2)−0.0134 (13)0.0004 (14)−0.0036 (16)
O10.0350 (11)0.0663 (17)0.0363 (12)−0.0061 (10)0.0104 (9)−0.0084 (11)
O20.0360 (11)0.0756 (19)0.0326 (12)−0.0084 (11)0.0010 (9)−0.0064 (11)
I10.04408 (14)0.06674 (19)0.04806 (15)−0.00641 (10)0.01933 (10)−0.00998 (11)
I20.04370 (14)0.0942 (3)0.06543 (19)−0.02088 (13)0.00969 (12)−0.03975 (15)
C1—C21.382 (4)C8—N21.344 (4)
C1—C61.391 (4)C8—C91.492 (4)
C1—H10.9300C9—C131.381 (5)
C2—C31.378 (4)C9—C101.384 (4)
C2—I12.089 (3)C10—C111.385 (5)
C3—C41.381 (4)C10—H100.9300
C3—H30.9300C11—C121.369 (6)
C4—C51.394 (4)C11—H110.9300
C4—I22.082 (3)C12—N31.329 (5)
C5—O11.341 (4)C12—H120.9300
C5—C61.402 (4)C13—N31.334 (4)
C6—C71.452 (4)C13—H130.9300
C7—N11.282 (4)N1—N21.381 (3)
C7—H70.9300N2—H20.8600
C8—O21.221 (4)O1—H1A0.8200
C2—C1—C6120.3 (3)N2—C8—C9115.3 (3)
C2—C1—H1119.9C13—C9—C10118.0 (3)
C6—C1—H1119.9C13—C9—C8123.1 (3)
C1—C2—C3120.6 (3)C10—C9—C8118.8 (3)
C1—C2—I1119.9 (2)C11—C10—C9118.6 (4)
C3—C2—I1119.5 (2)C11—C10—H10120.7
C4—C3—C2119.2 (3)C9—C10—H10120.7
C4—C3—H3120.4C12—C11—C10118.5 (3)
C2—C3—H3120.4C12—C11—H11120.7
C3—C4—C5121.7 (3)C10—C11—H11120.7
C3—C4—I2118.8 (2)N3—C12—C11124.3 (3)
C5—C4—I2119.5 (2)N3—C12—H12117.8
O1—C5—C4119.1 (3)C11—C12—H12117.8
O1—C5—C6122.6 (3)N3—C13—C9124.2 (3)
C4—C5—C6118.3 (3)N3—C13—H13117.9
C1—C6—C5119.9 (3)C9—C13—H13117.9
C1—C6—C7118.2 (3)C7—N1—N2116.2 (3)
C5—C6—C7121.9 (3)C8—N2—N1118.5 (3)
N1—C7—C6119.8 (3)C8—N2—H2120.8
N1—C7—H7120.1N1—N2—H2120.8
C6—C7—H7120.1C12—N3—C13116.4 (3)
O2—C8—N2123.0 (3)C5—O1—H1A109.5
O2—C8—C9121.8 (3)
C6—C1—C2—C3−1.2 (5)C5—C6—C7—N1−2.7 (5)
C6—C1—C2—I1−179.4 (2)O2—C8—C9—C13−152.5 (3)
C1—C2—C3—C41.9 (5)N2—C8—C9—C1326.8 (5)
I1—C2—C3—C4−179.8 (2)O2—C8—C9—C1024.1 (5)
C2—C3—C4—C5−0.5 (5)N2—C8—C9—C10−156.6 (3)
C2—C3—C4—I2177.2 (2)C13—C9—C10—C11−1.0 (5)
C3—C4—C5—O1178.5 (3)C8—C9—C10—C11−177.8 (3)
I2—C4—C5—O10.8 (4)C9—C10—C11—C12−0.6 (6)
C3—C4—C5—C6−1.6 (5)C10—C11—C12—N32.1 (7)
I2—C4—C5—C6−179.3 (2)C10—C9—C13—N31.5 (5)
C2—C1—C6—C5−1.0 (5)C8—C9—C13—N3178.1 (3)
C2—C1—C6—C7179.4 (3)C6—C7—N1—N2−179.4 (3)
O1—C5—C6—C1−177.7 (3)O2—C8—N2—N13.4 (5)
C4—C5—C6—C12.3 (5)C9—C8—N2—N1−175.9 (3)
O1—C5—C6—C71.9 (5)C7—N1—N2—C8166.1 (3)
C4—C5—C6—C7−178.0 (3)C11—C12—N3—C13−1.7 (6)
C1—C6—C7—N1177.0 (3)C9—C13—N3—C12−0.2 (6)
D—H···AD—HH···AD···AD—H···A
O1—H1A···N10.821.882.599 (4)146
N2—H2···O2i0.862.132.962 (4)163.
C7—H7···O2i0.932.593.367 (4)142.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯N10.821.882.599 (4)146
N2—H2⋯O2i0.862.132.962 (4)163
C7—H7⋯O2i0.932.593.367 (4)142

Symmetry code: (i) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Review 3.  Antituberculosis drugs: ten years of research.

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4.  [Not Available].

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5.  N'-(2-Hydr-oxy-4-methoxy-benzyl-idene)isonicotinohydrazide.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-20

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
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Authors:  A Thirugnanasundar; J Suresh; C Meenakshi; G Chakkaravarthi; G Rajagopal
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-14

2.  N'-[(1E)-3-Bromo-5-chloro-2-hy-droxy-benzyl-idene]-4-tert-butyl-benzo-hydrazide ethanol monosolvate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-05

3.  Crystal structure of (E)-5-di-ethyl-amino-2-({[4-(di-methyl-amino)-phen-yl]imino}-meth-yl)phenol.

Authors:  C Vidya Rani; G Chakkaravarthi; G Rajagopal
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-06-24

4.  Crystal structure of 5-di-ethyl-amino-2-({[4-(di-ethyl-amino)-phen-yl]imino}-meth-yl)phenol.

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