Literature DB >> 22037345

Parts plus pipes: synthetic biology approaches to metabolic engineering.

Patrick M Boyle1, Pamela A Silver.   

Abstract

Synthetic biologists combine modular biological "parts" to create higher-order devices. Metabolic engineers construct biological "pipes" by optimizing the microbial conversion of basic substrates to desired compounds. Many scientists work at the intersection of these two philosophies, employing synthetic devices to enhance metabolic engineering efforts. These integrated approaches promise to do more than simply improve product yields; they can expand the array of products that are tractable to produce biologically. In this review, we explore the application of synthetic biology techniques to next-generation metabolic engineering challenges, as well as the emerging engineering principles for biological design.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 22037345      PMCID: PMC3293987          DOI: 10.1016/j.ymben.2011.10.003

Source DB:  PubMed          Journal:  Metab Eng        ISSN: 1096-7176            Impact factor:   9.783


  125 in total

Review 1.  Gene regulation by riboswitches.

Authors:  Maumita Mandal; Ronald R Breaker
Journal:  Nat Rev Mol Cell Biol       Date:  2004-06       Impact factor: 94.444

Review 2.  Manufacturing molecules through metabolic engineering.

Authors:  Jay D Keasling
Journal:  Science       Date:  2010-12-03       Impact factor: 47.728

Review 3.  Expanding the metabolic engineering toolbox: more options to engineer cells.

Authors:  Keith E Tyo; Hal S Alper; Gregory N Stephanopoulos
Journal:  Trends Biotechnol       Date:  2007-01-24       Impact factor: 19.536

Review 4.  Uniqueness of the mechanism of protein import into the peroxisome matrix: transport of folded, co-factor-bound and oligomeric proteins by shuttling receptors.

Authors:  Sébastien Léon; Joel M Goodman; Suresh Subramani
Journal:  Biochim Biophys Acta       Date:  2006-08-30

5.  Engineering static and dynamic control of synthetic pathways.

Authors:  William J Holtz; Jay D Keasling
Journal:  Cell       Date:  2010-01-08       Impact factor: 41.582

6.  Contribution of a xylan-binding module to the degradation of a complex cellulosic substrate by designer cellulosomes.

Authors:  Sarah Moraïs; Yoav Barak; Jonathan Caspi; Yitzhak Hadar; Raphael Lamed; Yuval Shoham; David B Wilson; Edward A Bayer
Journal:  Appl Environ Microbiol       Date:  2010-04-16       Impact factor: 4.792

7.  Programming cells by multiplex genome engineering and accelerated evolution.

Authors:  Harris H Wang; Farren J Isaacs; Peter A Carr; Zachary Z Sun; George Xu; Craig R Forest; George M Church
Journal:  Nature       Date:  2009-07-26       Impact factor: 49.962

8.  Design, construction and characterization of a set of insulated bacterial promoters.

Authors:  Joseph H Davis; Adam J Rubin; Robert T Sauer
Journal:  Nucleic Acids Res       Date:  2010-09-15       Impact factor: 16.971

9.  A co-fermentation strategy to consume sugar mixtures effectively.

Authors:  Mark A Eiteman; Sarah A Lee; Elliot Altman
Journal:  J Biol Eng       Date:  2008-02-27       Impact factor: 4.355

10.  Programming gene expression with combinatorial promoters.

Authors:  Robert Sidney Cox; Michael G Surette; Michael B Elowitz
Journal:  Mol Syst Biol       Date:  2007-11-13       Impact factor: 11.429

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  29 in total

1.  Functional Characterization of a 28-Kilobase Catabolic Island from Pseudomonas sp. Strain M1 Involved in Biotransformation of β-Myrcene and Related Plant-Derived Volatiles.

Authors:  Pedro Soares-Castro; Pedro Montenegro-Silva; Hermann J Heipieper; Pedro M Santos
Journal:  Appl Environ Microbiol       Date:  2017-04-17       Impact factor: 4.792

Review 2.  Strategies for manipulation of oxygen utilization by the electron transfer chain in microbes for metabolic engineering purposes.

Authors:  George N Bennett; Ka-Yiu San
Journal:  J Ind Microbiol Biotechnol       Date:  2016-10-31       Impact factor: 3.346

Review 3.  Engineering of Metabolic Pathways Using Synthetic Enzyme Complexes.

Authors:  Nicholas Smirnoff
Journal:  Plant Physiol       Date:  2018-11-19       Impact factor: 8.340

Review 4.  Harnessing the power of microbial autotrophy.

Authors:  Nico J Claassens; Diana Z Sousa; Vitor A P Martins Dos Santos; Willem M de Vos; John van der Oost
Journal:  Nat Rev Microbiol       Date:  2016-09-26       Impact factor: 60.633

5.  Genetic switchboard for synthetic biology applications.

Authors:  Jarred M Callura; Charles R Cantor; James J Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-27       Impact factor: 11.205

Review 6.  Designer microbes for biosynthesis.

Authors:  Maureen B Quin; Claudia Schmidt-Dannert
Journal:  Curr Opin Biotechnol       Date:  2014-03-16       Impact factor: 9.740

Review 7.  Synthetic biology and regulatory networks: where metabolic systems biology meets control engineering.

Authors:  Fei He; Ettore Murabito; Hans V Westerhoff
Journal:  J R Soc Interface       Date:  2016-04-13       Impact factor: 4.118

8.  Synthetic gene circuits for metabolic control: design trade-offs and constraints.

Authors:  Diego A Oyarzún; Guy-Bart V Stan
Journal:  J R Soc Interface       Date:  2012-11-08       Impact factor: 4.118

9.  Programmed evolution for optimization of orthogonal metabolic output in bacteria.

Authors:  Todd T Eckdahl; A Malcolm Campbell; Laurie J Heyer; Jeffrey L Poet; David N Blauch; Nicole L Snyder; Dustin T Atchley; Erich J Baker; Micah Brown; Elizabeth C Brunner; Sean A Callen; Jesse S Campbell; Caleb J Carr; David R Carr; Spencer A Chadinha; Grace I Chester; Josh Chester; Ben R Clarkson; Kelly E Cochran; Shannon E Doherty; Catherine Doyle; Sarah Dwyer; Linnea M Edlin; Rebecca A Evans; Taylor Fluharty; Janna Frederick; Jonah Galeota-Sprung; Betsy L Gammon; Brandon Grieshaber; Jessica Gronniger; Katelyn Gutteridge; Joel Henningsen; Bradley Isom; Hannah L Itell; Erica C Keffeler; Andrew J Lantz; Jonathan N Lim; Erin P McGuire; Alexander K Moore; Jerrad Morton; Meredith Nakano; Sara A Pearson; Virginia Perkins; Phoebe Parrish; Claire E Pierson; Sachith Polpityaarachchige; Michael J Quaney; Abagael Slattery; Kathryn E Smith; Jackson Spell; Morgan Spencer; Telavive Taye; Kamay Trueblood; Caroline J Vrana; E Tucker Whitesides
Journal:  PLoS One       Date:  2015-02-25       Impact factor: 3.240

10.  Quantitative design of regulatory elements based on high-precision strength prediction using artificial neural network.

Authors:  Hailin Meng; Jianfeng Wang; Zhiqiang Xiong; Feng Xu; Guoping Zhao; Yong Wang
Journal:  PLoS One       Date:  2013-04-01       Impact factor: 3.240

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