Literature DB >> 20400556

Contribution of a xylan-binding module to the degradation of a complex cellulosic substrate by designer cellulosomes.

Sarah Moraïs1, Yoav Barak, Jonathan Caspi, Yitzhak Hadar, Raphael Lamed, Yuval Shoham, David B Wilson, Edward A Bayer.   

Abstract

Conversion of components of the Thermobifida fusca free-enzyme system to the cellulosomal mode using the designer cellulosome approach can be employed to discover the properties and inherent advantages of the cellulosome system. In this article, we describe the conversion of the T. fusca xylanases Xyn11A and Xyn10B and their synergistic interaction in the free state or within designer cellulosome complexes in order to enhance specific degradation of hatched wheat straw as a model for a complex cellulosic substrate. Endoglucanase Cel5A from the same bacterium and its recombinant dockerin-containing chimera were also studied for their combined effect, together with the xylanases, on straw degradation. Synergism was demonstrated when Xyn11A was combined with Xyn10B and/or Cel5A, and approximately 1.5-fold activity enhancements were achieved by the designer cellulosome complexes compared to the free wild-type enzymes. These improvements in activity were due to both substrate-targeting and proximity effects among the enzymes contained in the designer cellulosome complexes. The intrinsic cellulose/xylan-binding module (XBM) of Xyn11A appeared to be essential for efficient substrate degradation. Indeed, only designer cellulosomes in which the XBM was maintained as a component of Xyn11A achieved marked enhancement in activity compared to the combination of wild-type enzymes. Moreover, integration of the XBM in designer cellulosomes via a dockerin module (separate from the Xyn11A catalytic module) failed to enhance activity, suggesting a role in orienting the parent xylanase toward its preferred polysaccharide component of the complex wheat straw substrate. The results provide novel mechanistic insight into the synergistic activity of designer cellulosome components on natural plant cell wall substrates.

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Year:  2010        PMID: 20400556      PMCID: PMC2893491          DOI: 10.1128/AEM.00266-10

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  44 in total

1.  Optimized mixtures of recombinant Humicola insolens cellulases for the biodegradation of crystalline cellulose.

Authors:  C Boisset; C Pétrequin; H Chanzy; B Henrissat; M Schülein
Journal:  Biotechnol Bioeng       Date:  2001-02-05       Impact factor: 4.530

2.  Exploration of new geometries in cellulosome-like chimeras.

Authors:  Florence Mingardon; Angélique Chanal; Chantal Tardif; Edward A Bayer; Henri-Pierre Fierobe
Journal:  Appl Environ Microbiol       Date:  2007-09-28       Impact factor: 4.792

3.  Biomass recalcitrance: engineering plants and enzymes for biofuels production.

Authors:  Michael E Himmel; Shi-You Ding; David K Johnson; William S Adney; Mark R Nimlos; John W Brady; Thomas D Foust
Journal:  Science       Date:  2007-02-09       Impact factor: 47.728

4.  Cohesin-dockerin microarray: Diverse specificities between two complementary families of interacting protein modules.

Authors:  Rachel Haimovitz; Yoav Barak; Ely Morag; Milana Voronov-Goldman; Yuval Shoham; Raphael Lamed; Edward A Bayer
Journal:  Proteomics       Date:  2008-03       Impact factor: 3.984

5.  Sequence analysis of scaffolding protein CipC and ORFXp, a new cohesin-containing protein in Clostridium cellulolyticum: comparison of various cohesin domains and subcellular localization of ORFXp.

Authors:  S Pagès; A Bélaïch; H P Fierobe; C Tardif; C Gaudin; J P Bélaïch
Journal:  J Bacteriol       Date:  1999-03       Impact factor: 3.490

6.  Studies of Thermobifida fusca plant cell wall degrading enzymes.

Authors:  David B Wilson
Journal:  Chem Rec       Date:  2004       Impact factor: 6.771

7.  Characterization and sequence of a Thermomonospora fusca xylanase.

Authors:  D Irwin; E D Jung; D B Wilson
Journal:  Appl Environ Microbiol       Date:  1994-03       Impact factor: 4.792

8.  Conversion of Thermobifida fusca free exoglucanases into cellulosomal components: comparative impact on cellulose-degrading activity.

Authors:  Jonathan Caspi; Diana Irwin; Raphael Lamed; Yongchao Li; Henri-Pierre Fierobe; David B Wilson; Edward A Bayer
Journal:  J Biotechnol       Date:  2008-05-16       Impact factor: 3.307

9.  Effect of linker length and dockerin position on conversion of a Thermobifida fusca endoglucanase to the cellulosomal mode.

Authors:  Jonathan Caspi; Yoav Barak; Rachel Haimovitz; Diana Irwin; Raphael Lamed; David B Wilson; Edward A Bayer
Journal:  Appl Environ Microbiol       Date:  2009-10-09       Impact factor: 4.792

10.  Identification of the cellulose-binding domain of the cellulosome subunit S1 from Clostridium thermocellum YS.

Authors:  D M Poole; E Morag; R Lamed; E A Bayer; G P Hazlewood; H J Gilbert
Journal:  FEMS Microbiol Lett       Date:  1992-12-01       Impact factor: 2.742

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  25 in total

1.  Crucial roles of single residues in binding affinity, specificity, and promiscuity in the cellulosomal cohesin-dockerin interface.

Authors:  Michal Slutzki; Dan Reshef; Yoav Barak; Rachel Haimovitz; Shahar Rotem-Bamberger; Raphael Lamed; Edward A Bayer; Ora Schueler-Furman
Journal:  J Biol Chem       Date:  2015-04-01       Impact factor: 5.157

Review 2.  Natural strategies for the spatial optimization of metabolism in synthetic biology.

Authors:  Christina M Agapakis; Patrick M Boyle; Pamela A Silver
Journal:  Nat Chem Biol       Date:  2012-05-17       Impact factor: 15.040

3.  Characterization of Paenibacillus curdlanolyticus B-6 Xyn10D, a xylanase that contains a family 3 carbohydrate-binding module.

Authors:  Makiko Sakka; Yurika Higashi; Tetsuya Kimura; Khanok Ratanakhanokchai; Kazuo Sakka
Journal:  Appl Environ Microbiol       Date:  2011-04-15       Impact factor: 4.792

4.  Direct conversion of xylan to ethanol by recombinant Saccharomyces cerevisiae strains displaying an engineered minihemicellulosome.

Authors:  Jie Sun; Fei Wen; Tong Si; Jian-He Xu; Huimin Zhao
Journal:  Appl Environ Microbiol       Date:  2012-03-23       Impact factor: 4.792

5.  Toward combined delignification and saccharification of wheat straw by a laccase-containing designer cellulosome.

Authors:  Lital Davidi; Sarah Moraïs; Lior Artzi; Doriv Knop; Yitzhak Hadar; Yonathan Arfi; Edward A Bayer
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-12       Impact factor: 11.205

Review 6.  Parts plus pipes: synthetic biology approaches to metabolic engineering.

Authors:  Patrick M Boyle; Pamela A Silver
Journal:  Metab Eng       Date:  2011-10-25       Impact factor: 9.783

7.  A novel neutral xylanase with high SDS resistance from Volvariella volvacea: characterization and its synergistic hydrolysis of wheat bran with acetyl xylan esterase.

Authors:  Fei Zheng; Jingxuan Huang; Yuhao Yin; Shaojun Ding
Journal:  J Ind Microbiol Biotechnol       Date:  2013-08-01       Impact factor: 3.346

8.  Glycoside hydrolases as components of putative carbohydrate biosensor proteins in Clostridium thermocellum.

Authors:  Liat Bahari; Yuval Gilad; Ilya Borovok; Hamutal Kahel-Raifer; Bareket Dassa; Yakir Nataf; Yuval Shoham; Raphael Lamed; Edward A Bayer
Journal:  J Ind Microbiol Biotechnol       Date:  2010-09-06       Impact factor: 3.346

9.  Cellulase-xylanase synergy in designer cellulosomes for enhanced degradation of a complex cellulosic substrate.

Authors:  Sarah Moraïs; Yoav Barak; Jonathan Caspi; Yitzhak Hadar; Raphael Lamed; Yuval Shoham; David B Wilson; Edward A Bayer
Journal:  mBio       Date:  2010-12-14       Impact factor: 7.867

10.  Establishment of a simple Lactobacillus plantarum cell consortium for cellulase-xylanase synergistic interactions.

Authors:  Sarah Moraïs; Naama Shterzer; Inna Rozman Grinberg; Geir Mathiesen; Vincent G H Eijsink; Lars Axelsson; Raphael Lamed; Edward A Bayer; Itzhak Mizrahi
Journal:  Appl Environ Microbiol       Date:  2013-06-28       Impact factor: 4.792

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