Literature DB >> 22015592

Polarization-induced σ-holes and hydrogen bonding.

Matthias Hennemann1, Jane S Murray, Peter Politzer, Kevin E Riley, Timothy Clark.   

Abstract

The strong collinear polarizability of the A-H bond in A-H···B hydrogen bonds is shown to lead to an enhanced σ-hole on the donor hydrogen atom and hence to stronger hydrogen bonding. This effect helps to explain the directionality of hydrogen bonds, the well known cooperative effect in hydrogen bonding, and the occurrence of blue-shifting. The latter results when significant additional electron density is shifted into the A-H bonding region by the polarization effect. The shift in the A-H stretching frequency is shown to depend essentially linearly on the calculated atomic charge on the donor hydrogen for all donors in which A belongs to the same row of the periodic table. A further result of the polarization effect, which is also expected for other σ-hole bonds, is that the strength of the non-covalent interaction depends strongly on external electric fields.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 22015592     DOI: 10.1007/s00894-011-1263-5

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  14 in total

1.  Blue-Shifting Hydrogen Bonds.

Authors:  Pavel Hobza; Zdenek Havlas
Journal:  Chem Rev       Date:  2000-11-08       Impact factor: 60.622

Review 2.  Diverse world of unconventional hydrogen bonds.

Authors:  Natalia V Belkova; Elena S Shubina; Lina M Epstein
Journal:  Acc Chem Res       Date:  2005-08       Impact factor: 22.384

3.  Cooperative hydrogen bonding effects are key determinants of backbone amide proton chemical shifts in proteins.

Authors:  Laura L Parker; Andrew R Houk; Jan H Jensen
Journal:  J Am Chem Soc       Date:  2006-08-02       Impact factor: 15.419

4.  Blue shifts vs red shifts in sigma-hole bonding.

Authors:  Jane S Murray; Monica C Concha; Pat Lane; Pavel Hobza; Peter Politzer
Journal:  J Mol Model       Date:  2008-04-26       Impact factor: 1.810

5.  Polarized Molecular Orbital Model Chemistry. I. Ab Initio Foundations.

Authors:  Luke Fiedler; Jiali Gao; Donald G Truhlar
Journal:  J Chem Theory Comput       Date:  2011-03-03       Impact factor: 6.006

6.  Halogen bond tunability I: the effects of aromatic fluorine substitution on the strengths of halogen-bonding interactions involving chlorine, bromine, and iodine.

Authors:  Kevin E Riley; Jane S Murray; Jindřich Fanfrlík; Jan Rezáč; Ricardo J Solá; Monica C Concha; Felix M Ramos; Peter Politzer
Journal:  J Mol Model       Date:  2011-03-04       Impact factor: 1.810

7.  Halogen bonding: the sigma-hole. Proceedings of "Modeling interactions in biomolecules II", Prague, September 5th-9th, 2005.

Authors:  Timothy Clark; Matthias Hennemann; Jane S Murray; Peter Politzer
Journal:  J Mol Model       Date:  2006-08-23       Impact factor: 1.810

8.  Expansion of the sigma-hole concept.

Authors:  Jane S Murray; Pat Lane; Peter Politzer
Journal:  J Mol Model       Date:  2008-12-11       Impact factor: 1.810

9.  Probing the effect of the binding site on the electrostatic behavior of a series of carotenoids reconstituted into the light-harvesting 1 complex from purple photosynthetic bacterium Rhodospirillum rubrum detected by stark spectroscopy.

Authors:  Katsunori Nakagawa; Satoru Suzuki; Ritsuko Fujii; Alastair T Gardiner; Richard J Cogdell; Mamoru Nango; Hideki Hashimoto
Journal:  J Phys Chem B       Date:  2008-07-10       Impact factor: 2.991

10.  Br···O Complexes as Probes of Factors Affecting Halogen Bonding: Interactions of Bromobenzenes and Bromopyrimidines with Acetone.

Authors:  Kevin E Riley; Jane S Murray; Peter Politzer; Monica C Concha; Pavel Hobza
Journal:  J Chem Theory Comput       Date:  2008-12-18       Impact factor: 6.006

View more
  20 in total

1.  Halogen bond tunability II: the varying roles of electrostatic and dispersion contributions to attraction in halogen bonds.

Authors:  Kevin E Riley; Jane S Murray; Jindřich Fanfrlík; Jan Rezáč; Ricardo J Solá; Monica C Concha; Felix M Ramos; Peter Politzer
Journal:  J Mol Model       Date:  2012-05-29       Impact factor: 1.810

2.  Topological insights into the 1/1 diacetyl/water complex gained using a new methodological approach.

Authors:  D Dargent; E L Zins; B Madebène; M E Alikhani
Journal:  J Mol Model       Date:  2015-07-30       Impact factor: 1.810

3.  Theoretical study of the cooperative effects between the triel bond and the pnicogen bond in BF3···NCXH2···Y (X = P, As, Sb; Y = H2O, NH3) complexes.

Authors:  Ming-Xiu Liu; Hong-Ying Zhuo; Qing-Zhong Li; Wen-Zuo Li; Jian-Bo Cheng
Journal:  J Mol Model       Date:  2015-12-16       Impact factor: 1.810

4.  A new theoretical analysis of the cooperative effect in T-shaped hydrogen complexes of CnHm∙∙∙HCN∙∙∙HW with n = 2, m = 2 or 4, and W = F or CN.

Authors:  Boaz G Oliveira; Tamires F Costa; Regiane C M U Araújo
Journal:  J Mol Model       Date:  2013-05-31       Impact factor: 1.810

5.  An ab initio study on tunability of σ-hole interactions in XHS:PH2Y and XH2P:SHY complexes (X = F, Cl, Br; Y = H, OH, OCH3, CH3, C2H5, and NH2).

Authors:  Mehdi D Esrafili; Nafiseh Mohammadirad
Journal:  J Mol Model       Date:  2015-06-21       Impact factor: 1.810

6.  Mathematical modeling and physical reality in noncovalent interactions.

Authors:  Peter Politzer; Jane S Murray; Timothy Clark
Journal:  J Mol Model       Date:  2015-02-20       Impact factor: 1.810

7.  On bond-critical points in QTAIM and weak interactions.

Authors:  Christian R Wick; Timothy Clark
Journal:  J Mol Model       Date:  2018-05-31       Impact factor: 1.810

8.  ETS-NOCV description of σ-hole bonding.

Authors:  Karol Dyduch; Mariusz P Mitoraj; Artur Michalak
Journal:  J Mol Model       Date:  2012-09-30       Impact factor: 1.810

9.  The electronic mechanism ruling the dihydrogen bonds and halogen bonds in weakly bound systems of H3SiH···HOX and H 3SiH···XOH (X = F, Cl, and Br).

Authors:  Boaz G Oliveira; Abedin Zabardasti; Hamid Goudarziafshar; Maryam Salehnassaj
Journal:  J Mol Model       Date:  2015-03-10       Impact factor: 1.810

10.  Using halogen bonds to address the protein backbone: a systematic evaluation.

Authors:  Rainer Wilcken; Markus O Zimmermann; Andreas Lange; Stefan Zahn; Frank M Boeckler
Journal:  J Comput Aided Mol Des       Date:  2012-08-04       Impact factor: 3.686

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.