Literature DB >> 12702820

Analysis of the stimulatory effect of splicing on mRNA production and utilization in mammalian cells.

Shihua Lu1, Bryan R Cullen.   

Abstract

We have examined how splicing affects the expression of a range of human and nonhuman genes in vertebrate cells. Although our data demonstrate that splicing invariably enhances the level of gene expression, this positive effect is generally moderate. However, in the case of the human beta-globin gene, splicing is essential for significant protein expression. In the absence of introns, 3' end processing is inefficient, and this appears to be causally linked to a significant decrease in the level of both nuclear and cytoplasmic 3' end-processed RNA. In contrast, splicing appears to only modestly enhance nuclear mRNA export. Consistent with this observation, intronless beta-globin gene expression was only partially rescued by the insertion of retroviral nuclear mRNA export elements. Surprisingly, in the case of the highly intron dependent beta-globin gene, the mRNA that did reach the cytoplasm was also only inefficiently translated if it derived from an intronless expression plasmid. Together, these data argue that splicing can increase gene expression by enhancing mRNA 3' end processing, and hence, mRNA production. Moreover, in the case of the highly intron-dependent beta-globin gene, splicing also significantly enhanced the translational utilization of cytoplasmic beta-globin mRNAs.

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Year:  2003        PMID: 12702820      PMCID: PMC1370427          DOI: 10.1261/rna.5260303

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  53 in total

1.  Splicing is required for rapid and efficient mRNA export in metazoans.

Authors:  M J Luo; R Reed
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

2.  The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions.

Authors:  H Le Hir; E Izaurralde; L E Maquat; M J Moore
Journal:  EMBO J       Date:  2000-12-15       Impact factor: 11.598

3.  Pre-mRNA splicing imprints mRNA in the nucleus with a novel RNA-binding protein that persists in the cytoplasm.

Authors:  N Kataoka; J Yong; V N Kim; F Velazquez; R A Perkinson; F Wang; G Dreyfuss
Journal:  Mol Cell       Date:  2000-09       Impact factor: 17.970

4.  The protein Aly links pre-messenger-RNA splicing to nuclear export in metazoans.

Authors:  Z Zhou; M J Luo; K Straesser; J Katahira; E Hurt; R Reed
Journal:  Nature       Date:  2000-09-21       Impact factor: 49.962

5.  Intervening sequences increase efficiency of RNA 3' processing and accumulation of cytoplasmic RNA.

Authors:  M T Huang; C M Gorman
Journal:  Nucleic Acids Res       Date:  1990-02-25       Impact factor: 16.971

6.  In vitro polyadenylation is stimulated by the presence of an upstream intron.

Authors:  M Niwa; S D Rose; S M Berget
Journal:  Genes Dev       Date:  1990-09       Impact factor: 11.361

7.  Intron requirement for expression of the human purine nucleoside phosphorylase gene.

Authors:  J J Jonsson; M D Foresman; N Wilson; R S McIvor
Journal:  Nucleic Acids Res       Date:  1992-06-25       Impact factor: 16.971

8.  The carboxyl terminus of vertebrate poly(A) polymerase interacts with U2AF 65 to couple 3'-end processing and splicing.

Authors:  S Vagner; C Vagner; I W Mattaj
Journal:  Genes Dev       Date:  2000-02-15       Impact factor: 11.361

9.  Role of the hepatitis B virus posttranscriptional regulatory element in export of intronless transcripts.

Authors:  Z M Huang; T S Yen
Journal:  Mol Cell Biol       Date:  1995-07       Impact factor: 4.272

10.  A novel hepatitis B virus (HBV) genetic element with Rev response element-like properties that is essential for expression of HBV gene products.

Authors:  J Huang; T J Liang
Journal:  Mol Cell Biol       Date:  1993-12       Impact factor: 4.272

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  90 in total

1.  Splicing enhances translation in mammalian cells: an additional function of the exon junction complex.

Authors:  Ajit Nott; Hervé Le Hir; Melissa J Moore
Journal:  Genes Dev       Date:  2004-01-15       Impact factor: 11.361

2.  A novel function for Sam68: enhancement of HIV-1 RNA 3' end processing.

Authors:  Meredith McLaren; Kengo Asai; Alan Cochrane
Journal:  RNA       Date:  2004-07       Impact factor: 4.942

Review 3.  Nucleocytoplasmic transport: integrating mRNA production and turnover with export through the nuclear pore.

Authors:  Christian Dimaano; Katharine S Ullman
Journal:  Mol Cell Biol       Date:  2004-04       Impact factor: 4.272

4.  Functional dissection of hnRNP D suggests that nuclear import is required before hnRNP D can modulate mRNA turnover in the cytoplasm.

Authors:  Chyi-Ying A Chen; Nianhua Xu; Wenmiao Zhu; Ann-Bin Shyu
Journal:  RNA       Date:  2004-04       Impact factor: 4.942

5.  Alternative processing of hepatitis delta virus antigenomic RNA transcripts.

Authors:  Xingcao Nie; Jinhong Chang; John M Taylor
Journal:  J Virol       Date:  2004-05       Impact factor: 5.103

6.  Adenovirus VA1 noncoding RNA can inhibit small interfering RNA and MicroRNA biogenesis.

Authors:  Shihua Lu; Bryan R Cullen
Journal:  J Virol       Date:  2004-12       Impact factor: 5.103

7.  Export and stability of naturally intronless mRNAs require specific coding region sequences and the TREX mRNA export complex.

Authors:  Haixin Lei; Anusha P Dias; Robin Reed
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-18       Impact factor: 11.205

8.  U1 snRNP-mediated poly(A) site suppression: beneficial and deleterious for mRNA fate.

Authors:  Jörg Langemeier; Maximilian Radtke; Jens Bohne
Journal:  RNA Biol       Date:  2013-01-16       Impact factor: 4.652

9.  Nuclear Pnn/DRS protein binds to spliced mRNPs and participates in mRNA processing and export via interaction with RNPS1.

Authors:  Chin Li; Ru-Inn Lin; Ming-Chih Lai; Pin Ouyang; Woan-Yuh Tarn
Journal:  Mol Cell Biol       Date:  2003-10       Impact factor: 4.272

10.  Rds3p is required for stable U2 snRNP recruitment to the splicing apparatus.

Authors:  Qiang Wang; Brian C Rymond
Journal:  Mol Cell Biol       Date:  2003-10       Impact factor: 4.272

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