| Literature DB >> 22007308 |
Lindsey R Boone1, Patricia A Brooks, Melissa I Niesen, Gene C Ness.
Abstract
Background. Alterations in expression of hepatic genes that could contribute to resistance to dietary cholesterol were investigated in Sprague-Dawley rats, which are known to be resistant to the serum cholesterol raising action of dietary cholesterol. Methods. Microarray analysis was used to provide a comprehensive analysis of changes in hepatic gene expression in rats in response to dietary cholesterol. Changes were confirmed by RT-PCR analysis. Western blotting was employed to measure changes in hepatic cholesterol 7α hydroxylase protein. Results. Of the 28,000 genes examined using the Affymetrix rat microarray, relatively few were significantly altered. As expected, decreases were observed for several genes that encode enzymes of the cholesterol biosynthetic pathway. The largest decreases were seen for squalene epoxidase and lanosterol 14α demethylase (CYP 51A1). These changes were confirmed by quantitative RT-PCR. LDL receptor expression was not altered by dietary cholesterol. Critically, the expression of cholesterol 7α hydroxylase, which catalyzes the rate-limiting step in bile acid synthesis, was increased over 4-fold in livers of rats fed diets containing 1% cholesterol. In contrast, mice, which are not resistant to dietary cholesterol, exhibited lower hepatic cholesterol 7α hydroxylase (CYP7A1) protein levels, which were not increased in response to diets containing 2% cholesterol.Entities:
Year: 2011 PMID: 22007308 PMCID: PMC3189572 DOI: 10.1155/2011/101242
Source DB: PubMed Journal: J Lipids ISSN: 2090-3049
Oligonucleotide sequences used for RT-PCR analysis.
| Gene | Primers | Sequence (5′→3′) |
|---|---|---|
| SQLE | Sense | AGTGAACAAACGAGGCGTCCTACT |
| Antisense | AAAGCGACTGTCATTCCTCCACCA | |
| CYP51 | Sense | TTAGGTGACAACCTGACACACGCT |
| Antisense | TGCTTACTGTCTTGCTCCTGGTGT | |
| ABCG8 | Sense | GATGCTGGCTATCATAGGGAGC |
| Antisense | TCTCTGCCTGTGATAACGTCGA | |
| ABCG5 | Sense | TGAGCTCTTCCACCACTTCGACAA |
| Antisense | TGTCCACCGATGTCAAGTCCATGT | |
| ACAT2 | Sense | TTGTGCCAGTGCACGTGTCTTCTA |
| Antisense | GCTTCAGCTTGCTCATGGCTTCAA | |
| CYP7A | Sense | TGAAAGCGGGAAAGCAAAGACCAC |
| Antisense | TCTTGGACGGCAAAGAGTCTTCCA | |
| 7DHCR | Sense | TCAGCTTCCAGGTGCTGCTTTACT |
| Antisense | ACAATCCCTGCTGGAGTTATGGCA | |
| D14SR | Sense | AATGGTTTCCAGGCTCTGGTGCTA |
| Antisense | ATAAAGCTGGTGAGAGTGGTCGCA | |
| HMGCR | Sense | ATTGCACCGACAAGAAACCTGCTG |
| Antisense | TTCTCTCACCACCTTGGCTGGAAT | |
| HMGCS | Sense | TTGGTAGTTGCAGGAGACATCGCT |
| Antisense | AGCATTTGGCCCAATTAGCAGAGC | |
| IGFBP1 | Sense | AGAGGAACAGCTGCTGGATAGCTT |
| Antisense | AGGGCTCCTTCCATTTCTTGAGGT | |
| LANS | Sense | ACTCTACGATGCTGTGGCTGTGTT |
| Antisense | AAATACCCGCCACGCTTAGTCTCA | |
| LIPIN2 | Sense | TCTGCCATGGACTTGCCTGATGTA |
| Antisense | ACTCGTGGTACGTGATGATGTGCT | |
| PPAR | Sense | AGACCTTGTGCATGGCTGAGAAGA |
| Antisense | AATCGGACCTCTGCCTCCTTGTTT | |
| PPAR | Sense | CAATGCCATCAGGTTTGGGCGAAT |
| Antisense | ATACAAATGCTTTGCCAGGGCTCG | |
| SC4MEOX | Sense | ACCTGGCACTATTTCCTGCACAGA |
| Antisense | AGCCTGGAACTCGTGATGGACTTC |
Serum and liver cholesterol levels.
| Condition | Serum | Liver |
|---|---|---|
| Mg/100 mL | Mg/g | |
| Normal | 128 ± 5 | 3.2 ± 0.3 |
| Cholesterol fed | 102 ± 4 | 6.2 ± 0.5* |
*P < 0.01 compared with normal chow fed rats. A 2-tailed distribution t-test, equal variance was used.
Microarray analysis identifying genes upregulated by dietary cholesterol.
| Normal | Cholesterol | Fold diff | Gene | ||||
|---|---|---|---|---|---|---|---|
| 386 | 507 | 439 | 2377 | 1264 | 2347 | +4.5** | Insulin-like growth factor binding protein 1 |
| 476 | 457 | 536 | 2322 | 2418 | 988 | +3.9* | B-cell leukemia/lymphoma 6 (predicted) |
| 3597 | 5311 | 8493 | 16287 | 17914 | 12394 | +2.7** | Cholesterol 7 |
| 73 | 304 | 546 | 853 | 747 | 746 | +2.5* | Similar to Ran-binding protein 2 (predicted) |
| 2287 | 1733 | 1841 | 5590 | 5726 | 5166 | +2.8** | Zinc finger protein 354A |
| 127 | 387 | 320 | 756 | 494 | 773 | +2.4* | PPAR |
| 253 | 372 | 250 | 766 | 759 | 536 | +2.4** | Lipin 2 (predicted) |
| 34 | 131 | 263 | 332 | 303 | 344 | +2.3* | Zinc finger, matrin-like (predicted) |
| 207 | 684 | 856 | 1358 | 1006 | 1277 | +2.1* | HGPRTase |
| 4255 | 2830 | 4209 | 9654 | 4959 | 8308 | +2.0 | Glucose-6-phosphatase |
*P < 0.05; **P < 0.01. A 2-tailed distribution t-test, equal variance was used.
RT-PCR analysis.
| Gene | Normal | Cholesterol | Fold |
|
|---|---|---|---|---|
| ABCG5 | 1.00 ± 0.07 | 0.67 ± 0.09 | −1.49 | 0.018 |
| ABCG8 | 1.02 ± 0.17 | 0.17 ± 0.03 | −6.00 | 0.003 |
| HMG-CoA synthase | 1.03 ± 0.23 | 0.23 ± 0.01 | −4.48 | 0.008 |
| Squalene epoxidase | 1.17 ± 0.26 | 0.14 ± 0.03 | −8.29 | 0.002 |
| Lanosterol 14 | 0.71 ± 0.28 | 0.16 ± 0.01 | −4.53 | 0.027 |
| Delta 14 sterol reductase | 1.03 ± 0.31 | 0.19 ± 0.15 | −5.33 | 0.013 |
| Lanosterol synthase | 1.12 ± 0.58 | 0.33 ± 0.14 | −3.39 | 0.083 |
| ACAT-2 | 1.00 ± 0.08 | 0.31 ± 0.07 | −3.20 | 0.001 |
| Sterol C4 Me Ox like | 1.04 ± 0.31 | 0.39 ± 0.50 | −2.65 | 0.128 |
| 7-Dehydrocholesterol red | 1.01 ± 0.13 | 0.50 ± 0.06 | −2.00 | 0.004 |
| HMG-CoA reductase | 1.02 ± 0.26 | 0.73 ± 0.28 | −1.40 | 0.261 |
| PPAR gamma | 1.07 ± 0.40 | 1.02 ± 0.89 | −1.04 | 0.944 |
| PPAR alpha | 1.01 ± 0.18 | 1.06 ± 0.44 | +1.05 | 0.852 |
| Lipin 2 (predicted) | 1.03 ± 0.29 | 1.64 ± 0.42 | +1.59 | 0.105 |
| Chol 7 | 1.17 ± 0.35 | 3.27 ± 0.97 | +2.79 | 0.044 |
| IGFBP1 | 1.02 ± 0.31 | 4.30 ± 1.90 | +4.22 | 0.042 |
A 2-tailed distribution t-test, equal variance was used.
Microarray analysis identifying genes downregulated by dietary cholesterol.
| Normal | Cholesterol | Fold diff | Gene | ||||
|---|---|---|---|---|---|---|---|
| 1185 | 2381 | 1598 | 219 | 232 | 203 | −7.9** | Squalene epoxidase |
| 588 | 783 | 426 | 148 | 84 | 143 | −4.8** | ABCG8 |
| 574 | 373 | 195 | 51 | 144 | 62 | −4.5 | Hypo protein XP_580018 |
| 2353 | 3066 | 2285 | 735 | 783 | 503 | −3.8* | Acetyl CoA Acetyltransferase2 |
| 10377 | 11676 | 10752 | 2690 | 3350 | 3329 | −3.5** | Lanosterol 14 |
| 3890 | 4874 | 3668 | 929 | 1280 | 1426 | −3.4** | Delta 14 sterol reductase |
| 1049 | 893 | 1196 | 186 | 216 | 542 | −3.3** | Cytokine inducible SH2 protein |
| 238 | 316 | 242 | 65 | 115 | 76 | −3.1** | Nuc factor, erythroid derived 2 |
| 733 | 1023 | 760 | 233 | 232 | 345 | −3.1** | Ephrin A5 |
| 1998 | 608 | 524 | 340 | 343 | 375 | −3.0 | Dual specificity phosphatase1 |
| 11250 | 14322 | 9729 | 3511 | 4636 | 4315 | −2.8** | Sterol C4 methyl oxidase-like |
| 6083 | 6326 | 4997 | 1961 | 2597 | 2103 | −2.6** | 7-Dehydrocholesterol reductase |
| 2851 | 2771 | 2112 | 1027 | 879 | 1055 | −2.6** | Solute carrier family 25 mem 30 |
| 14079 | 17666 | 16412 | 5555 | 6296 | 7154 | −2.5** | HMG-CoA Synthase 1 |
| 14890 | 13208 | 12147 | 5146 | 5920 | 5178 | −2.5** | Farnesyl diphosphate synthase |
| 1857 | 2636 | 1792 | 882 | 1025 | 635 | −2.5** | Lanosterol synthase |
| 4946 | 5502 | 4267 | 1503 | 2456 | 1667 | −2.6** | Farnesyl diphos transferase 1 |
| 1695 | 2518 | 1567 | 870 | 834 | 814 | −2.3* | ABCG5 |
| 13476 | 13702 | 14018 | 6048 | 7357 | 5541 | −2.2** | Fatty acid desaturase 1 |
| 10599 | 8161 | 6620 | 3050 | 4215 | 4797 | −2.1* | Hemato expressed homeobox |
| 444 | 591 | 470 | 225 | 288 | 205 | −2.1** | Acetoacetyl CoA synthase |
| 1269 | 1465 | 1136 | 604 | 749 | 548 | −2.0** | Hypo protein XP_579849 |
| 10087 | 11135 | 8727 | 4223 | 5304 | 5287 | −2.0** | HMGCR |
| 2516 | 2177 | 2744 | 1138 | 1049 | 1509 | −2.0** | Forkhead box A2 |
| 848 | 1080 | 873 | 538 | 444 | 432 | −2.0** | Mevalonate kinase |
*P < 0.05; **P < 0.01. A 2-tailed distribution t-test, equal variance was used.
Figure 1Comparison of the effects of dietary cholesterol on hepatic cholesterol 7α hydroxylase protein levels in rats and Mice. Rats (R) and mice (M) were fed normal (N) chow diets with or without 1% or 2% cholesterol (C) for 5 days. A representative Western blot of hepatic microsomal cholesterol 7α hydroxylase protein is presented.
Figure 2Effect of cholesterol feeding on hepatic squalene epoxidase mRNA levels. Rats were fed a diet containing 1% cholesterol for the indicated number of days. Hepatic mRNA levels were determined by RT-PCR. Values are given as means ± Standard Error for 3 to 6 rats per time point. *P < 0.05; **P < 0.01.
Figure 3Effect of cholesterol feeding on hepatic lanosterol 14α demethylase mRNA levels. Rats were fed a diet containing 1% cholesterol for the indicated number of days. Hepatic mRNA levels were determined by RT-PCR. Values are given as means ± Standard Error for 3 to 6 rats per time point. *P < 0.05; **P < 0.01.