Literature DB >> 22004757

The two-pathway model of the biological catch-bond as a limit of the allosteric model.

Yuriy V Pereverzev1, Eugenia Prezhdo, Evgeni V Sokurenko.   

Abstract

Catch-binding is a counterintuitive phenomenon in which the lifetime of a receptor/ligand bond increases when a force is applied to break the bond. Several mechanisms have been proposed to rationalize catch-binding. In the two-pathway model, the force drives the system away from its native dissociation pathway into an alternative pathway involving a higher energy barrier. Here, we analyze an allosteric model suggesting that a force applied to the complex alters the distribution of receptor conformations, and as a result, induces changes in the ligand-binding site. The model assumes explicitly that the allosteric transitions govern the properties of the ligand site. We demonstrate that the dynamics of the ligand is described by two relaxation times, one of which arises from the allosteric site. Therefore, we argue that one can characterize the allosteric transitions by studying the receptor/ligand binding. We show that the allosteric description reduces to the two-pathway model in the limit when the allosteric transitions are faster than the bond dissociation. The formal results are illustrated with two systems, P-selectin/PSGL-1 and FimH/mannose, subjected to both constant and time-dependent forces. The report advances our understanding of catch-binding by combining alternative physical models into a unified description and makes the problem more tractable for the bond mechanics community.
Copyright © 2011 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 22004757      PMCID: PMC3192973          DOI: 10.1016/j.bpj.2011.09.005

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  50 in total

1.  Bacterial adhesion to target cells enhanced by shear force.

Authors:  Wendy E Thomas; Elena Trintchina; Manu Forero; Viola Vogel; Evgeni V Sokurenko
Journal:  Cell       Date:  2002-06-28       Impact factor: 41.582

2.  Distinctive features of the biological catch bond in the jump-ramp force regime predicted by the two-pathway model.

Authors:  Yuriy V Pereverzev; Oleg V Prezhdo; Wendy E Thomas; Evgeni V Sokurenko
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-07-19

3.  Integrin-like allosteric properties of the catch bond-forming FimH adhesin of Escherichia coli.

Authors:  Veronika Tchesnokova; Pavel Aprikian; Olga Yakovenko; Christopher Larock; Brian Kidd; Viola Vogel; Wendy Thomas; Evgeni Sokurenko
Journal:  J Biol Chem       Date:  2008-01-03       Impact factor: 5.157

4.  Theory, analysis, and interpretation of single-molecule force spectroscopy experiments.

Authors:  Olga K Dudko; Gerhard Hummer; Attila Szabo
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-13       Impact factor: 11.205

Review 5.  Long-timescale molecular dynamics simulations of protein structure and function.

Authors:  John L Klepeis; Kresten Lindorff-Larsen; Ron O Dror; David E Shaw
Journal:  Curr Opin Struct Biol       Date:  2009-04-08       Impact factor: 6.809

6.  Structural basis for selectin mechanochemistry.

Authors:  Timothy A Springer
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-31       Impact factor: 11.205

Review 7.  Biophysics of catch bonds.

Authors:  Wendy E Thomas; Viola Vogel; Evgeni Sokurenko
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

8.  Regulation of catch binding by allosteric transitions.

Authors:  Yuriy V Pereverzev; Oleg V Prezhdo; Evgeni V Sokurenko
Journal:  J Phys Chem B       Date:  2010-09-16       Impact factor: 2.991

9.  Platelet glycoprotein Ibalpha forms catch bonds with human WT vWF but not with type 2B von Willebrand disease vWF.

Authors:  Tadayuki Yago; Jizhong Lou; Tao Wu; Jun Yang; Jonathan J Miner; Leslie Coburn; José A López; Miguel A Cruz; Jing-Fei Dong; Larry V McIntire; Rodger P McEver; Cheng Zhu
Journal:  J Clin Invest       Date:  2008-09       Impact factor: 14.808

10.  Demonstration of catch bonds between an integrin and its ligand.

Authors:  Fang Kong; Andrés J García; A Paul Mould; Martin J Humphries; Cheng Zhu
Journal:  J Cell Biol       Date:  2009-06-29       Impact factor: 10.539

View more
  10 in total

1.  Selectin catch-bonds mechanotransduce integrin activation and neutrophil arrest on inflamed endothelium under shear flow.

Authors:  Vasilios A Morikis; Shannon Chase; Ted Wun; Elliot L Chaikof; John L Magnani; Scott I Simon
Journal:  Blood       Date:  2017-08-15       Impact factor: 22.113

2.  Dynamics of Mechanosensitive Nascent Adhesion Formation.

Authors:  Laurent MacKay; Anmar Khadra
Journal:  Biophys J       Date:  2019-08-12       Impact factor: 4.033

3.  Catch bond interaction between cell-surface sulfatase Sulf1 and glycosaminoglycans.

Authors:  Alexander Harder; Ann-Kristin Möller; Fabian Milz; Phillipp Neuhaus; Volker Walhorn; Thomas Dierks; Dario Anselmetti
Journal:  Biophys J       Date:  2015-04-07       Impact factor: 4.033

4.  Assessing models of force-dependent unbinding rates via infrequent metadynamics.

Authors:  Willmor J Peña Ccoa; Glen M Hocky
Journal:  J Chem Phys       Date:  2022-03-28       Impact factor: 3.488

5.  Molecular Paradigms for Biological Mechanosensing.

Authors:  David Gomez; Willmor J Peña Ccoa; Yuvraj Singh; Enrique Rojas; Glen M Hocky
Journal:  J Phys Chem B       Date:  2021-10-28       Impact factor: 3.466

6.  Affinity Selection in Germinal Centers: Cautionary Tales and New Opportunities.

Authors:  Jose Faro; Mario Castro
Journal:  Cells       Date:  2021-04-28       Impact factor: 6.600

7.  Exploring the Sulfatase 1 Catch Bond Free Energy Landscape using Jarzynski's Equality.

Authors:  Volker Walhorn; Ann-Kristin Möller; Christian Bartz; Thomas Dierks; Dario Anselmetti
Journal:  Sci Rep       Date:  2018-11-15       Impact factor: 4.379

Review 8.  The bioenergetics of integrin-based adhesion, from single molecule dynamics to stability of macromolecular complexes.

Authors:  Laurent MacKay; Anmar Khadra
Journal:  Comput Struct Biotechnol J       Date:  2020-02-13       Impact factor: 7.271

9.  Asymmetric effect of mechanical stress on the forward and reverse reaction catalyzed by an enzyme.

Authors:  Collin Joseph; Chiao-Yu Tseng; Giovanni Zocchi; Tsvi Tlusty
Journal:  PLoS One       Date:  2014-07-07       Impact factor: 3.240

10.  Molecular design of the γδT cell receptor ectodomain encodes biologically fit ligand recognition in the absence of mechanosensing.

Authors:  Robert J Mallis; Jonathan S Duke-Cohan; Dibyendu Kumar Das; Aoi Akitsu; Adrienne M Luoma; Debasis Banik; Hannah M Stephens; Paul W Tetteh; Caitlin D Castro; Sophie Krahnke; Rebecca E Hussey; Brian Lawney; Kristine N Brazin; Pedro A Reche; Wonmuk Hwang; Erin J Adams; Matthew J Lang; Ellis L Reinherz
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-29       Impact factor: 11.205

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.