Literature DB >> 20735005

Regulation of catch binding by allosteric transitions.

Yuriy V Pereverzev1, Oleg V Prezhdo, Evgeni V Sokurenko.   

Abstract

An allosteric model is used to describe changes in lifetimes of biological receptor-ligand bonds subjected to an external force. Force-induced transitions between the two states of the allosteric site lead to changes in the receptor conformation. The ligand bound to the receptor fluctuates between two different potentials formed by the two receptor conformations. The effect of the force on the receptor-ligand interaction potential is described by the Bell mechanism. The probability of detecting the ligand in the bound state is found to depend on the relaxation times of both ligand and allosteric sites. An analytic expression for the bond lifetime is derived as a function of force. The formal theoretical results are used to explain the anomalous force and time dependences of the integrin-fibronectin bond lifetimes measured by atomic force microscopy (Kong, F.; et al J. Cell Biol. 2009, 185, 1275-1284). The analytic expression and model parameters describe very well all anomalous dependences identified in the experiments.

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Year:  2010        PMID: 20735005      PMCID: PMC2938877          DOI: 10.1021/jp1031459

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  59 in total

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Authors:  Wendy E Thomas; Elena Trintchina; Manu Forero; Viola Vogel; Evgeni V Sokurenko
Journal:  Cell       Date:  2002-06-28       Impact factor: 41.582

2.  A structure-based sliding-rebinding mechanism for catch bonds.

Authors:  Jizhong Lou; Cheng Zhu
Journal:  Biophys J       Date:  2006-12-01       Impact factor: 4.033

Review 3.  Force as a facilitator of integrin conformational changes during leukocyte arrest on blood vessels and antigen-presenting cells.

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Journal:  Immunity       Date:  2007-01       Impact factor: 31.745

4.  Theory, analysis, and interpretation of single-molecule force spectroscopy experiments.

Authors:  Olga K Dudko; Gerhard Hummer; Attila Szabo
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-13       Impact factor: 11.205

5.  Long-range coupling in an allosteric receptor revealed by mutant cycle analysis.

Authors:  Kristin R Gleitsman; Jai A P Shanata; Shawnalea J Frazier; Henry A Lester; Dennis A Dougherty
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

6.  Mechanically activated integrin switch controls alpha5beta1 function.

Authors:  Julie C Friedland; Mark H Lee; David Boettiger
Journal:  Science       Date:  2009-01-30       Impact factor: 47.728

7.  Guanylate kinase, induced fit, and the allosteric spring probe.

Authors:  Brian Choi; Giovanni Zocchi
Journal:  Biophys J       Date:  2006-12-01       Impact factor: 4.033

8.  Reconciling the "old" and "new" views of protein allostery: a molecular simulation study of chemotaxis Y protein (CheY).

Authors:  Mark S Formaneck; Liang Ma; Qiang Cui
Journal:  Proteins       Date:  2006-06-01

9.  Platelet glycoprotein Ibalpha forms catch bonds with human WT vWF but not with type 2B von Willebrand disease vWF.

Authors:  Tadayuki Yago; Jizhong Lou; Tao Wu; Jun Yang; Jonathan J Miner; Leslie Coburn; José A López; Miguel A Cruz; Jing-Fei Dong; Larry V McIntire; Rodger P McEver; Cheng Zhu
Journal:  J Clin Invest       Date:  2008-09       Impact factor: 14.808

10.  Demonstration of catch bonds between an integrin and its ligand.

Authors:  Fang Kong; Andrés J García; A Paul Mould; Martin J Humphries; Cheng Zhu
Journal:  J Cell Biol       Date:  2009-06-29       Impact factor: 10.539

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  2 in total

1.  The two-pathway model of the biological catch-bond as a limit of the allosteric model.

Authors:  Yuriy V Pereverzev; Eugenia Prezhdo; Evgeni V Sokurenko
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

Review 2.  Mechanochemitry: a molecular biomechanics view of mechanosensing.

Authors:  Cheng Zhu
Journal:  Ann Biomed Eng       Date:  2013-09-05       Impact factor: 3.934

  2 in total

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