Literature DB >> 34709040

Molecular Paradigms for Biological Mechanosensing.

David Gomez1,2, Willmor J Peña Ccoa2, Yuvraj Singh2, Enrique Rojas1, Glen M Hocky2.   

Abstract

Many proteins in living cells are subject to mechanical forces, which can be generated internally by molecular machines, or externally, e.g., by pressure gradients. In general, these forces fall in the piconewton range, which is similar in magnitude to forces experienced by a molecule due to thermal fluctuations. While we would naively expect such moderate forces to produce only minimal changes, a wide variety of "mechanosensing" proteins have evolved with functions that are responsive to forces in this regime. The goal of this article is to provide a physical chemistry perspective on protein-based molecular mechanosensing paradigms used in living systems, and how these paradigms can be explored using novel computational methods.

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Year:  2021        PMID: 34709040      PMCID: PMC9074121          DOI: 10.1021/acs.jpcb.1c06330

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   3.466


  73 in total

1.  Chemical reactions modulated by mechanical stress: extended Bell theory.

Authors:  Sai Sriharsha M Konda; Johnathan N Brantley; Christopher W Bielawski; Dmitrii E Makarov
Journal:  J Chem Phys       Date:  2011-10-28       Impact factor: 3.488

2.  Protein structural change upon ligand binding: linear response theory.

Authors:  Mitsunori Ikeguchi; Jiro Ueno; Miwa Sato; Akinori Kidera
Journal:  Phys Rev Lett       Date:  2005-02-24       Impact factor: 9.161

3.  Protein structure homology modeling using SWISS-MODEL workspace.

Authors:  Lorenza Bordoli; Florian Kiefer; Konstantin Arnold; Pascal Benkert; James Battey; Torsten Schwede
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

4.  Structural basis for mechanical force regulation of the adhesin FimH via finger trap-like beta sheet twisting.

Authors:  Isolde Le Trong; Pavel Aprikian; Brian A Kidd; Manu Forero-Shelton; Veronika Tchesnokova; Ponni Rajagopal; Victoria Rodriguez; Gianluca Interlandi; Rachel Klevit; Viola Vogel; Ronald E Stenkamp; Evgeni V Sokurenko; Wendy E Thomas
Journal:  Cell       Date:  2010-05-14       Impact factor: 41.582

Review 5.  Biophysics of catch bonds.

Authors:  Wendy E Thomas; Viola Vogel; Evgeni Sokurenko
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

6.  GPR68 Senses Flow and Is Essential for Vascular Physiology.

Authors:  Jie Xu; Jayanti Mathur; Emilie Vessières; Scott Hammack; Keiko Nonomura; Julie Favre; Linda Grimaud; Matt Petrus; Allain Francisco; Jingyuan Li; Van Lee; Fu-Li Xiang; James K Mainquist; Stuart M Cahalan; Anthony P Orth; John R Walker; Shang Ma; Viktor Lukacs; Laura Bordone; Michael Bandell; Bryan Laffitte; Yan Xu; Shu Chien; Daniel Henrion; Ardem Patapoutian
Journal:  Cell       Date:  2018-04-19       Impact factor: 41.582

7.  A large-conductance mechanosensitive channel in E. coli encoded by mscL alone.

Authors:  S I Sukharev; P Blount; B Martinac; F R Blattner; C Kung
Journal:  Nature       Date:  1994-03-17       Impact factor: 49.962

8.  Spider Silk Peptide Is a Compact, Linear Nanospring Ideal for Intracellular Tension Sensing.

Authors:  Michael D Brenner; Ruobo Zhou; Daniel E Conway; Luca Lanzano; Enrico Gratton; Martin A Schwartz; Taekjip Ha
Journal:  Nano Lett       Date:  2016-02-03       Impact factor: 11.189

9.  Structural investigation of MscL gating using experimental data and coarse grained MD simulations.

Authors:  Evelyne Deplazes; Martti Louhivuori; Dylan Jayatilaka; Siewert J Marrink; Ben Corry
Journal:  PLoS Comput Biol       Date:  2012-09-20       Impact factor: 4.475

10.  Structural basis of αE-catenin-F-actin catch bond behavior.

Authors:  Xiao-Ping Xu; Sabine Pokutta; Megan Torres; Mark F Swift; Dorit Hanein; Niels Volkmann; William I Weis
Journal:  Elife       Date:  2020-09-11       Impact factor: 8.140

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  1 in total

1.  Assessing models of force-dependent unbinding rates via infrequent metadynamics.

Authors:  Willmor J Peña Ccoa; Glen M Hocky
Journal:  J Chem Phys       Date:  2022-03-28       Impact factor: 3.488

  1 in total

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