Literature DB >> 21988838

Optimization of complex cancer morphology detection using the SIVQ pattern recognition algorithm.

Jason Hipp1, Steven Christopher Smith, Jerome Cheng, Scott Arthur Tomlins, James Monaco, Anant Madabhushi, Lakshmi Priya Kunju, Ulysses J Balis.   

Abstract

For personalization of medicine, increasingly clinical and demographic data are integrated into nomograms for prognostic use, while molecular biomarkers are being developed to add independent diagnostic, prognostic, or management information. In a number of cases in surgical pathology, morphometric quantitation is already performed manually or semi-quantitatively, with this effort contributing to diagnostic workup. Digital whole slide imaging, coupled with emerging image analysis algorithms, offers great promise as an adjunctive tool for the surgical pathologist in areas of screening, quality assurance, consistency, and quantitation. We have recently reported such an algorithm, SIVQ (Spatially Invariant Vector Quantization), which avails itself of the geometric advantages of ring vectors for pattern matching, and have proposed a number of potential applications. One key test, however, remains the need for demonstration and optimization of SIVQ for discrimination between foreground (neoplasm- malignant epithelium) and background (normal parenchyma, stroma, vessels, inflammatory cells). Especially important is the determination of relative contributions of each key SIVQ matching parameter with respect to the algorithm's overall detection performance. Herein, by combinatorial testing of SIVQ ring size, sub-ring number, and inter-ring wobble parameters, in the setting of a morphologically complex bladder cancer use case, we ascertain the relative contributions of each of these parameters towards overall detection optimization using urothelial carcinoma as a use case, providing an exemplar by which this algorithm and future histology-oriented pattern matching tools may be validated and subsequently, implemented broadly in other appropriate microscopic classification settings.

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Year:  2012        PMID: 21988838      PMCID: PMC4605573          DOI: 10.3233/ACP-2011-0040

Source DB:  PubMed          Journal:  Anal Cell Pathol (Amst)        ISSN: 2210-7177            Impact factor:   2.916


  9 in total

1.  SIVQ-LCM protocol for the ArcturusXT instrument.

Authors:  Jason D Hipp; Jerome Cheng; Jeffrey C Hanson; Avi Z Rosenberg; Michael R Emmert-Buck; Michael A Tangrea; Ulysses J Balis
Journal:  J Vis Exp       Date:  2014-07-23       Impact factor: 1.355

Review 2.  An Assessment of Imaging Informatics for Precision Medicine in Cancer.

Authors:  C Chennubhotla; L P Clarke; A Fedorov; D Foran; G Harris; E Helton; R Nordstrom; F Prior; D Rubin; J H Saltz; E Shalley; A Sharma
Journal:  Yearb Med Inform       Date:  2017-09-11

3.  Semiautomated laser capture microdissection of lung adenocarcinoma cytology samples.

Authors:  Sinchita Roy Chowdhuri; Jeffrey Hanson; Jerome Cheng; Jaime Rodriguez-Canales; Patricia Fetsch; Ulysses Balis; Armando C Filie; Giuseppe Giaccone; Michael R Emmert-Buck; Jason D Hipp
Journal:  Acta Cytol       Date:  2012-11-24       Impact factor: 2.319

4.  Tryggo: Old norse for truth: The real truth about ground truth: New insights into the challenges of generating ground truth maps for WSI CAD algorithm evaluation.

Authors:  Jason D Hipp; Steven C Smith; Jeffrey Sica; David Lucas; Jennifer A Hipp; Lakshmi P Kunju; Ulysses J Balis
Journal:  J Pathol Inform       Date:  2012-03-16

5.  Image microarrays derived from tissue microarrays (IMA-TMA): New resource for computer-aided diagnostic algorithm development.

Authors:  Jennifer A Hipp; Jason D Hipp; Megan Lim; Gaurav Sharma; Lauren B Smith; Stephen M Hewitt; Ulysses G J Balis
Journal:  J Pathol Inform       Date:  2012-07-12

Review 6.  Novel genotype-phenotype associations in human cancers enabled by advanced molecular platforms and computational analysis of whole slide images.

Authors:  Lee A D Cooper; Jun Kong; David A Gutman; William D Dunn; Michael Nalisnik; Daniel J Brat
Journal:  Lab Invest       Date:  2015-01-19       Impact factor: 5.662

7.  Nuclear features of infiltrating urothelial carcinoma are distinguished from low-grade noninvasive papillary urothelial carcinoma by image analysis.

Authors:  Noritake Kosuge; Masanao Saio; Hirofumi Matsumoto; Hajime Aoyama; Akiko Matsuzaki; Naoki Yoshimi
Journal:  Oncol Lett       Date:  2017-06-23       Impact factor: 2.967

8.  Discriminative Scale Learning (DiScrn): Applications to Prostate Cancer Detection from MRI and Needle Biopsies.

Authors:  Haibo Wang; Satish Viswanath; Anant Madabhushi
Journal:  Sci Rep       Date:  2017-09-28       Impact factor: 4.379

9.  Computer-Aided Laser Dissection: A Microdissection Workflow Leveraging Image Analysis Tools.

Authors:  Jason D Hipp; Donald J Johann; Yun Chen; Anant Madabhushi; James Monaco; Jerome Cheng; Jaime Rodriguez-Canales; Martin C Stumpe; Greg Riedlinger; Avi Z Rosenberg; Jeffrey C Hanson; Lakshmi P Kunju; Michael R Emmert-Buck; Ulysses J Balis; Michael A Tangrea
Journal:  J Pathol Inform       Date:  2018-12-11
  9 in total

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