Literature DB >> 23207440

Semiautomated laser capture microdissection of lung adenocarcinoma cytology samples.

Sinchita Roy Chowdhuri1, Jeffrey Hanson, Jerome Cheng, Jaime Rodriguez-Canales, Patricia Fetsch, Ulysses Balis, Armando C Filie, Giuseppe Giaccone, Michael R Emmert-Buck, Jason D Hipp.   

Abstract

OBJECTIVE: In the past decade molecular diagnostics has changed the clinical management of lung adenocarcinoma patients. Molecular diagnostics, however, is largely dependent on the quantity and quality of the tumor DNA that is retrieved from the tissue or cytology samples. Frequently, patients are diagnosed on cytology specimens where the tumor cells are scattered within the cell block, making selecting for tumor enrichment difficult. In the past we have used laser capture microdissection (LCM) to select for pure populations of tumor cells to increase the sensitivity of molecular assays. This study explores several methods for semiautomated computer-guided LCM. STUDY
DESIGN: Hematoxylin and eosin- or TTF-1-immunostained slides from a pleural effusion cell block with metastatic lung adenocarcinoma were used for LCM with either AutoScan or a recently described pattern-matching algorithm, spatially invariant vector quantization (SIVQ), to define morphologic predicates (vectors) to select cells of interest.
RESULTS: We retrieved pure populations of tumor cells using both algorithm-guided LCM approaches with slight variations in cellular retrievals. Both methods were semiautomated, requiring minimum technical supervision.
CONCLUSION: In this study we demonstrate the first semiautomated, computer-guided LCM of a cytology specimen using SIVQ and AutoScan, a first step towards the long-term goal of integrating LCM into the clinical cytology-molecular workflow.
Copyright © 2012 S. Karger AG, Basel.

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Year:  2012        PMID: 23207440      PMCID: PMC7449585          DOI: 10.1159/000342984

Source DB:  PubMed          Journal:  Acta Cytol        ISSN: 0001-5547            Impact factor:   2.319


  37 in total

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Authors:  Franziska C Eberle; Jeffrey C Hanson; J Keith Killian; Lai Wei; Kris Ylaya; Stephen M Hewitt; Elaine S Jaffe; Michael R Emmert-Buck; Jaime Rodriguez-Canales
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Review 3.  Cytology-based gene mutation tests to predict response to anti-epidermal growth factor receptor therapy: a review.

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4.  Laser capture microdissection for proteome analysis.

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Review 8.  Genome-wide screening of laser capture microdissected gastric signet-ring cell carcinomas.

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9.  Immuno-LCM: laser capture microdissection of immunostained frozen sections for mRNA analysis.

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10.  KRAS mutations and primary resistance of lung adenocarcinomas to gefitinib or erlotinib.

Authors:  William Pao; Theresa Y Wang; Gregory J Riely; Vincent A Miller; Qiulu Pan; Marc Ladanyi; Maureen F Zakowski; Robert T Heelan; Mark G Kris; Harold E Varmus
Journal:  PLoS Med       Date:  2005-01-25       Impact factor: 11.069

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  4 in total

1.  SIVQ-LCM protocol for the ArcturusXT instrument.

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Review 2.  Novel genotype-phenotype associations in human cancers enabled by advanced molecular platforms and computational analysis of whole slide images.

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3.  Computer-Aided Laser Dissection: A Microdissection Workflow Leveraging Image Analysis Tools.

Authors:  Jason D Hipp; Donald J Johann; Yun Chen; Anant Madabhushi; James Monaco; Jerome Cheng; Jaime Rodriguez-Canales; Martin C Stumpe; Greg Riedlinger; Avi Z Rosenberg; Jeffrey C Hanson; Lakshmi P Kunju; Michael R Emmert-Buck; Ulysses J Balis; Michael A Tangrea
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4.  Simplified molecular classification of lung adenocarcinomas based on EGFR, KRAS, and TP53 mutations.

Authors:  Roberto Ruiz-Cordero; Junsheng Ma; Abha Khanna; Genevieve Lyons; Waree Rinsurongkawong; Roland Bassett; Ming Guo; Mark J Routbort; Jianjun Zhang; Ferdinandos Skoulidis; John Heymach; Emily B Roarty; Zhenya Tang; L Jeffrey Medeiros; Keyur P Patel; Rajyalakshmi Luthra; Sinchita Roy-Chowdhuri
Journal:  BMC Cancer       Date:  2020-01-31       Impact factor: 4.430

  4 in total

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