OBJECTIVE: In the past decade molecular diagnostics has changed the clinical management of lung adenocarcinoma patients. Molecular diagnostics, however, is largely dependent on the quantity and quality of the tumor DNA that is retrieved from the tissue or cytology samples. Frequently, patients are diagnosed on cytology specimens where the tumor cells are scattered within the cell block, making selecting for tumor enrichment difficult. In the past we have used laser capture microdissection (LCM) to select for pure populations of tumor cells to increase the sensitivity of molecular assays. This study explores several methods for semiautomated computer-guided LCM. STUDY DESIGN: Hematoxylin and eosin- or TTF-1-immunostained slides from a pleural effusion cell block with metastatic lung adenocarcinoma were used for LCM with either AutoScan or a recently described pattern-matching algorithm, spatially invariant vector quantization (SIVQ), to define morphologic predicates (vectors) to select cells of interest. RESULTS: We retrieved pure populations of tumor cells using both algorithm-guided LCM approaches with slight variations in cellular retrievals. Both methods were semiautomated, requiring minimum technical supervision. CONCLUSION: In this study we demonstrate the first semiautomated, computer-guided LCM of a cytology specimen using SIVQ and AutoScan, a first step towards the long-term goal of integrating LCM into the clinical cytology-molecular workflow.
OBJECTIVE: In the past decade molecular diagnostics has changed the clinical management of lung adenocarcinomapatients. Molecular diagnostics, however, is largely dependent on the quantity and quality of the tumor DNA that is retrieved from the tissue or cytology samples. Frequently, patients are diagnosed on cytology specimens where the tumor cells are scattered within the cell block, making selecting for tumor enrichment difficult. In the past we have used laser capture microdissection (LCM) to select for pure populations of tumor cells to increase the sensitivity of molecular assays. This study explores several methods for semiautomated computer-guided LCM. STUDY DESIGN:Hematoxylin and eosin- or TTF-1-immunostained slides from a pleural effusion cell block with metastatic lung adenocarcinoma were used for LCM with either AutoScan or a recently described pattern-matching algorithm, spatially invariant vector quantization (SIVQ), to define morphologic predicates (vectors) to select cells of interest. RESULTS: We retrieved pure populations of tumor cells using both algorithm-guided LCM approaches with slight variations in cellular retrievals. Both methods were semiautomated, requiring minimum technical supervision. CONCLUSION: In this study we demonstrate the first semiautomated, computer-guided LCM of a cytology specimen using SIVQ and AutoScan, a first step towards the long-term goal of integrating LCM into the clinical cytology-molecular workflow.
Authors: Franziska C Eberle; Jeffrey C Hanson; J Keith Killian; Lai Wei; Kris Ylaya; Stephen M Hewitt; Elaine S Jaffe; Michael R Emmert-Buck; Jaime Rodriguez-Canales Journal: J Mol Diagn Date: 2010-04-22 Impact factor: 5.568
Authors: William D Travis; Natasha Rekhtman; Gregory J Riley; Kim R Geisinger; Hisao Asamura; Elisabeth Brambilla; Kavita Garg; Fred R Hirsch; Masayuki Noguchi; Charles A Powell; Valerie W Rusch; Giorgio Scagliotti; Yasushi Yatabe Journal: J Thorac Oncol Date: 2010-04 Impact factor: 15.609
Authors: William Pao; Vincent Miller; Maureen Zakowski; Jennifer Doherty; Katerina Politi; Inderpal Sarkaria; Bhuvanesh Singh; Robert Heelan; Valerie Rusch; Lucinda Fulton; Elaine Mardis; Doris Kupfer; Richard Wilson; Mark Kris; Harold Varmus Journal: Proc Natl Acad Sci U S A Date: 2004-08-25 Impact factor: 11.205
Authors: David M Jackman; Vincent A Miller; Leigh-Anne Cioffredi; Beow Y Yeap; Pasi A Jänne; Gregory J Riely; Marielle Gallegos Ruiz; Giuseppe Giaccone; Lecia V Sequist; Bruce E Johnson Journal: Clin Cancer Res Date: 2009-08-11 Impact factor: 12.531
Authors: William Pao; Theresa Y Wang; Gregory J Riely; Vincent A Miller; Qiulu Pan; Marc Ladanyi; Maureen F Zakowski; Robert T Heelan; Mark G Kris; Harold E Varmus Journal: PLoS Med Date: 2005-01-25 Impact factor: 11.069
Authors: Jason D Hipp; Jerome Cheng; Jeffrey C Hanson; Avi Z Rosenberg; Michael R Emmert-Buck; Michael A Tangrea; Ulysses J Balis Journal: J Vis Exp Date: 2014-07-23 Impact factor: 1.355
Authors: Lee A D Cooper; Jun Kong; David A Gutman; William D Dunn; Michael Nalisnik; Daniel J Brat Journal: Lab Invest Date: 2015-01-19 Impact factor: 5.662
Authors: Jason D Hipp; Donald J Johann; Yun Chen; Anant Madabhushi; James Monaco; Jerome Cheng; Jaime Rodriguez-Canales; Martin C Stumpe; Greg Riedlinger; Avi Z Rosenberg; Jeffrey C Hanson; Lakshmi P Kunju; Michael R Emmert-Buck; Ulysses J Balis; Michael A Tangrea Journal: J Pathol Inform Date: 2018-12-11