Literature DB >> 25078867

SIVQ-LCM protocol for the ArcturusXT instrument.

Jason D Hipp1, Jerome Cheng2, Jeffrey C Hanson1, Avi Z Rosenberg1, Michael R Emmert-Buck1, Michael A Tangrea3, Ulysses J Balis2.   

Abstract

SIVQ-LCM is a new methodology that automates and streamlines the more traditional, user-dependent laser dissection process. It aims to create an advanced, rapidly customizable laser dissection platform technology. In this report, we describe the integration of the image analysis software Spatially Invariant Vector Quantization (SIVQ) onto the ArcturusXT instrument. The ArcturusXT system contains both an infrared (IR) and ultraviolet (UV) laser, allowing for specific cell or large area dissections. The principal goal is to improve the speed, accuracy, and reproducibility of the laser dissection to increase sample throughput. This novel approach facilitates microdissection of both animal and human tissues in research and clinical workflows.

Entities:  

Mesh:

Year:  2014        PMID: 25078867      PMCID: PMC4406165          DOI: 10.3791/51662

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  23 in total

1.  Laser-capture microdissection.

Authors:  Virginia Espina; Julia D Wulfkuhle; Valerie S Calvert; Amy VanMeter; Weidong Zhou; George Coukos; David H Geho; Emanuel F Petricoin; Lance A Liotta
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

2.  Expression microdissection adapted to commercial laser dissection instruments.

Authors:  Jeffrey C Hanson; Michael A Tangrea; Skye Kim; Michael D Armani; Thomas J Pohida; Robert F Bonner; Jaime Rodriguez-Canales; Michael R Emmert-Buck
Journal:  Nat Protoc       Date:  2011-03-18       Impact factor: 13.491

3.  Laser capture microdissection.

Authors:  M R Emmert-Buck; R F Bonner; P D Smith; R F Chuaqui; Z Zhuang; S R Goldstein; R A Weiss; L A Liotta
Journal:  Science       Date:  1996-11-08       Impact factor: 47.728

4.  Integration of architectural and cytologic driven image algorithms for prostate adenocarcinoma identification.

Authors:  Jason Hipp; James Monaco; L Priya Kunju; Jerome Cheng; Yukako Yagi; Jaime Rodriguez-Canales; Michael R Emmert-Buck; Stephen Hewitt; Michael D Feldman; John E Tomaszewski; Mehmet Toner; Ronald G Tompkins; Thomas Flotte; David Lucas; John R Gilbertson; Anant Madabhushi; Ulysses Balis
Journal:  Anal Cell Pathol (Amst)       Date:  2012       Impact factor: 2.916

5.  Automated area calculation of histopathologic features using SIVQ.

Authors:  Jason Hipp; Jerome Cheng; Stephanie Daignault; Jefferey Sica; Michael C Dugan; David Lucas; Yukako Yagi; Stephen Hewitt; Ulysses J Balis
Journal:  Anal Cell Pathol (Amst)       Date:  2011       Impact factor: 2.916

6.  Laser capture microdissection of mammalian tissue.

Authors:  Robert A Edwards
Journal:  J Vis Exp       Date:  2007-10-01       Impact factor: 1.355

7.  Spatially Invariant Vector Quantization: A pattern matching algorithm for multiple classes of image subject matter including pathology.

Authors:  Jason D Hipp; Jerome Y Cheng; Mehmet Toner; Ronald G Tompkins; Ulysses J Balis
Journal:  J Pathol Inform       Date:  2011-02-26

8.  Distinctions in gastric cancer gene expression signatures derived from laser capture microdissection versus histologic macrodissection.

Authors:  Hark Kyun Kim; Joseph Kim; Susie Korolevich; Il Ju Choi; Chang Hee Kim; David J Munroe; Jeffrey E Green
Journal:  BMC Med Genomics       Date:  2011-06-02       Impact factor: 3.063

9.  Optimization of complex cancer morphology detection using the SIVQ pattern recognition algorithm.

Authors:  Jason Hipp; Steven Christopher Smith; Jerome Cheng; Scott Arthur Tomlins; James Monaco; Anant Madabhushi; Lakshmi Priya Kunju; Ulysses J Balis
Journal:  Anal Cell Pathol (Amst)       Date:  2012       Impact factor: 2.916

10.  Laser capture microdissected mucosa versus whole tissue specimens for assessment of radiation-induced dynamic molecular and pathway changes in the small intestine.

Authors:  Junying Zheng; Sarita Garg; Junru Wang; David S Loose; Martin Hauer-Jensen
Journal:  PLoS One       Date:  2013-01-14       Impact factor: 3.240

View more
  2 in total

1.  Effect of Antigen Retrieval on Genomic DNA From Immunodissected Samples.

Authors:  Donald J Johann; Ik Jae Shin; Adam Roberge; Sarah Laun; Erich A Peterson; Meei Liu; Matthew A Steliga; Jason Muesse; Michael R Emmert-Buck; Michael A Tangrea
Journal:  J Histochem Cytochem       Date:  2022-09-21       Impact factor: 4.137

Review 2.  Artificial intelligence and machine learning for early detection and diagnosis of colorectal cancer in sub-Saharan Africa.

Authors:  Akbar K Waljee; Eileen M Weinheimer-Haus; Amina Abubakar; Anthony K Ngugi; Geoffrey H Siwo; Gifty Kwakye; Amit G Singal; Arvind Rao; Sameer D Saini; Andrew J Read; Jessica A Baker; Ulysses Balis; Christopher K Opio; Ji Zhu; Mansoor N Saleh
Journal:  Gut       Date:  2022-04-13       Impact factor: 31.793

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.