Literature DB >> 20712999

Thermal and structural stability of adsorbed proteins.

Sumit Sharma1, B J Berne, Sanat K Kumar.   

Abstract

Experimental evidence suggests that proteins adsorbed to hydrophobic surfaces at low coverages are stabilized relative to the bulk. For larger coverages, proteins unfold and form beta-sheets. We performed computer simulations on model proteins and found that: 1), For weakly adsorbing surfaces, unfolded conformations lose more entropy upon adsorption than folded ones. 2), The melting temperature, both in the bulk and at surfaces, decreases with increasing protein concentration because of favorable interprotein interactions. 3), Proteins in the bulk show large unfolding free energy barriers; this barrier decreases at stronger adsorbing surfaces. We conjecture that typical experimental temperatures appear to be below the bulk melting temperature for a single protein, but above the melting temperature for concentrated protein solutions. Purely thermodynamic factors then explain protein stabilization on adsorption at low concentrations. However, both thermodynamic and kinetic factors are important at higher concentrations. Thus, proteins in the bulk do not denature with increasing concentration due to large kinetic barriers, even though the aggregated state is thermodynamically preferred. However, they readily unfold upon adsorption, with the surface acting as a heterogeneous catalyst. The thermal behavior of proteins adsorbed to hydrophobic surfaces thus appears to follow behavior independent of their chemical specificity. 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20712999      PMCID: PMC2920629          DOI: 10.1016/j.bpj.2010.05.030

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  26 in total

1.  Surface-induced conformational changes in lattice model proteins by Monte Carlo simulation.

Authors:  Victoria Castells; Shaoxiong Yang; Paul R Van Tassel
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2002-03-05

2.  Stabilization of proteins in confined spaces.

Authors:  H X Zhou; K A Dill
Journal:  Biochemistry       Date:  2001-09-25       Impact factor: 3.162

3.  Structural changes and molecular interactions of hydrophobin SC3 in solution and on a hydrophobic surface.

Authors:  X Wang; M L de Vocht; J de Jonge; B Poolman; G T Robillard
Journal:  Protein Sci       Date:  2002-05       Impact factor: 6.725

4.  Influence of hydrophobic Teflon particles on the structure of amyloid beta-peptide.

Authors:  Carla E Giacomelli; Willem Norde
Journal:  Biomacromolecules       Date:  2003 Nov-Dec       Impact factor: 6.988

5.  Protein unfolding at interfaces: slow dynamics of alpha-helix to beta-sheet transition.

Authors:  Ananthakrishnan Sethuraman; Ganesh Vedantham; Taiji Imoto; Todd Przybycien; Georges Belfort
Journal:  Proteins       Date:  2004-09-01

6.  Protein encapsulation in mesoporous silicate: the effects of confinement on protein stability, hydration, and volumetric properties.

Authors:  Revanur Ravindra; Shuang Zhao; Hermann Gies; Roland Winter
Journal:  J Am Chem Soc       Date:  2004-10-06       Impact factor: 15.419

7.  Enhanced stability of enzymes adsorbed onto nanoparticles.

Authors:  Prashanth Asuri; Sandeep S Karajanagi; Alexey A Vertegel; Jonathan S Dordick; Ravi S Kane
Journal:  J Nanosci Nanotechnol       Date:  2007 Apr-May

8.  Finite size effects on locating conformational transitions for macromolecules.

Authors:  Sumit Sharma; Sanat K Kumar
Journal:  J Chem Phys       Date:  2008-10-07       Impact factor: 3.488

9.  Buried charged surface in proteins.

Authors:  T Kajander; P C Kahn; S H Passila; D C Cohen; L Lehtiö; W Adolfsen; J Warwicker; U Schell; A Goldman
Journal:  Structure       Date:  2000-11-15       Impact factor: 5.006

10.  How interfaces affect hydrophobically driven polymer folding.

Authors:  Sumanth N Jamadagni; Rahul Godawat; Jonathan S Dordick; Shekhar Garde
Journal:  J Phys Chem B       Date:  2009-04-02       Impact factor: 2.991

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  9 in total

1.  Extended surfaces modulate hydrophobic interactions of neighboring solutes.

Authors:  Amish J Patel; Patrick Varilly; Sumanth N Jamadagni; Hari Acharya; Shekhar Garde; David Chandler
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-10       Impact factor: 11.205

2.  Assisted peptide folding by surface pattern recognition.

Authors:  Zhuoyun Zhuang; Andrew I Jewett; Silvan Kuttimalai; Giovanni Bellesia; S Gnanakaran; Joan-Emma Shea
Journal:  Biophys J       Date:  2011-03-02       Impact factor: 4.033

3.  Protein stability at a carbon nanotube interface.

Authors:  S Vaitheeswaran; A E Garcia
Journal:  J Chem Phys       Date:  2011-03-28       Impact factor: 3.488

4.  Quantification of the influence of protein-protein interactions on adsorbed protein structure and bioactivity.

Authors:  Yang Wei; Aby A Thyparambil; Robert A Latour
Journal:  Colloids Surf B Biointerfaces       Date:  2013-05-13       Impact factor: 5.268

5.  Interplay of Coil-Globule Transition and Surface Adsorption of a Lattice HP Protein Model.

Authors:  Meng-Bo Luo; Jesse D Ziebarth; Yongmei Wang
Journal:  J Phys Chem B       Date:  2014-12-11       Impact factor: 2.991

6.  Determining the role of missense mutations in the POU domain of HNF1A that reduce the DNA-binding affinity: A computational approach.

Authors:  Sneha P; Thirumal Kumar D; George Priya Doss C; Siva R; Hatem Zayed
Journal:  PLoS One       Date:  2017-04-14       Impact factor: 3.240

7.  Protein crystal nucleation in pores.

Authors:  Christo N Nanev; Emmanuel Saridakis; Naomi E Chayen
Journal:  Sci Rep       Date:  2017-01-16       Impact factor: 4.379

Review 8.  Microbial Lipases and Their Potential in the Production of Pharmaceutical Building Blocks.

Authors:  César A Godoy; Juan S Pardo-Tamayo; Oveimar Barbosa
Journal:  Int J Mol Sci       Date:  2022-09-01       Impact factor: 6.208

9.  A coarse-grained protein model in a water-like solvent.

Authors:  Sumit Sharma; Sanat K Kumar; Sergey V Buldyrev; Pablo G Debenedetti; Peter J Rossky; H Eugene Stanley
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

  9 in total

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