Literature DB >> 21972952

Decelerated water dynamics and vibrational couplings of hydrated DNA mapped by two-dimensional infrared spectroscopy.

Ming Yang1, Łukasz Szyc, Thomas Elsaesser.   

Abstract

Double-stranded DNA oligomers containing 23 alternating adenine-thymine base pairs are studied at different hydration levels by femtosecond two-dimensional (2D) infrared spectrosopy. Coupled NH stretching modes of the A-T pairs and OH stretching excitations of the water shell are discerned in the 2D spectra. Limited changes of NH stretching frequencies and line shapes with increasing hydration suggest spectral dynamics governed by DNA rather than water fluctuations. In contrast, OH stretching excitations of the water shell around fully hydrated DNA undergo spectral diffusion on a ~500 fs time scale. The center line slopes of the 2D spectra of hydrated DNA demonstrate a slower decay of the frequency-time correlation function (TCF) than that in neat water, as is evident from a comparison with 2D spectra of neat H(2)O and theoretical TCFs. We attribute this behavior to reduced structural fluctuations of the water shell and a reduced rate of resonant OH stretching energy transfer.

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Year:  2011        PMID: 21972952     DOI: 10.1021/jp208166w

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  8 in total

1.  N-H stretching modes of adenosine monomer in solution studied by ultrafast nonlinear infrared spectroscopy and ab initio calculations.

Authors:  Christian Greve; Nicholas K Preketes; Rene Costard; Benjamin Koeppe; Henk Fidder; Erik T J Nibbering; Friedrich Temps; Shaul Mukamel; Thomas Elsaesser
Journal:  J Phys Chem A       Date:  2012-07-18       Impact factor: 2.781

Review 2.  Applications of two-dimensional infrared spectroscopy.

Authors:  Amanda L Le Sueur; Rachel E Horness; Megan C Thielges
Journal:  Analyst       Date:  2015-07-07       Impact factor: 4.616

Review 3.  Watching Proteins Wiggle: Mapping Structures with Two-Dimensional Infrared Spectroscopy.

Authors:  Ayanjeet Ghosh; Joshua S Ostrander; Martin T Zanni
Journal:  Chem Rev       Date:  2017-01-06       Impact factor: 60.622

Review 4.  Water Dynamics in the Hydration Shells of Biomolecules.

Authors:  Damien Laage; Thomas Elsaesser; James T Hynes
Journal:  Chem Rev       Date:  2017-03-01       Impact factor: 60.622

5.  Perspective: Structure and ultrafast dynamics of biomolecular hydration shells.

Authors:  Damien Laage; Thomas Elsaesser; James T Hynes
Journal:  Struct Dyn       Date:  2017-04-20       Impact factor: 2.920

6.  Molecular couplings and energy exchange between DNA and water mapped by femtosecond infrared spectroscopy of backbone vibrations.

Authors:  Yingliang Liu; Biswajit Guchhait; Torsten Siebert; Benjamin P Fingerhut; Thomas Elsaesser
Journal:  Struct Dyn       Date:  2017-04-07       Impact factor: 2.920

7.  Picosecond orientational dynamics of water in living cells.

Authors:  Martijn Tros; Linli Zheng; Johannes Hunger; Mischa Bonn; Daniel Bonn; Gertien J Smits; Sander Woutersen
Journal:  Nat Commun       Date:  2017-10-12       Impact factor: 14.919

8.  Probing the Hydrogen-Bonding Environment of Individual Bases in DNA Duplexes with Isotope-Edited Infrared Spectroscopy.

Authors:  Robert J Fick; Amy Y Liu; Felix Nussbaumer; Christoph Kreutz; Atul Rangadurai; Yu Xu; Roger D Sommer; Honglue Shi; Steve Scheiner; Allison L Stelling
Journal:  J Phys Chem B       Date:  2021-07-08       Impact factor: 2.991

  8 in total

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