Literature DB >> 22724894

N-H stretching modes of adenosine monomer in solution studied by ultrafast nonlinear infrared spectroscopy and ab initio calculations.

Christian Greve1, Nicholas K Preketes, Rene Costard, Benjamin Koeppe, Henk Fidder, Erik T J Nibbering, Friedrich Temps, Shaul Mukamel, Thomas Elsaesser.   

Abstract

The N-H stretching vibrations of adenine, one of the building blocks of DNA, are studied by combining infrared absorption and nonlinear two-dimensional infrared spectroscopy with ab initio calculations. We determine diagonal and off-diagonal anharmonicities of N-H stretching vibrations in chemically modified adenosine monomer dissolved in chloroform. For the single-quantum excitation manifold, the normal mode picture with symmetric and asymmetric NH(2) stretching vibrations is fully appropriate. For the two-quantum excitation manifold, however, the interplay between intermode coupling and frequency shifts due to a large diagonal anharmonicity leads to a situation where strong mixing does not occur. We compare our findings with previously reported values obtained on overtone spectroscopy of coupled hydrogen stretching oscillators.

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Year:  2012        PMID: 22724894      PMCID: PMC3441835          DOI: 10.1021/jp303864m

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  33 in total

1.  Decelerated water dynamics and vibrational couplings of hydrated DNA mapped by two-dimensional infrared spectroscopy.

Authors:  Ming Yang; Łukasz Szyc; Thomas Elsaesser
Journal:  J Phys Chem B       Date:  2011-10-18       Impact factor: 2.991

Review 2.  Ultrafast vibrational dynamics and local interactions of hydrated DNA.

Authors:  Łukasz Szyc; Ming Yang; Erik T J Nibbering; Thomas Elsaesser
Journal:  Angew Chem Int Ed Engl       Date:  2010-05-10       Impact factor: 15.336

3.  Infrared and Raman line shapes for ice Ih. I. Dilute HOD in H(2)O and D(2)O.

Authors:  F Li; J L Skinner
Journal:  J Chem Phys       Date:  2010-05-28       Impact factor: 3.488

4.  Scaling Factors and Uncertainties for ab Initio Anharmonic Vibrational Frequencies.

Authors:  Russell D Johnson; Karl K Irikura; Raghu N Kacker; Rüdiger Kessel
Journal:  J Chem Theory Comput       Date:  2010-09-14       Impact factor: 6.006

Review 5.  Coherent multidimensional optical spectroscopy of excitons in molecular aggregates; quasiparticle versus supermolecule perspectives.

Authors:  Darius Abramavicius; Benoit Palmieri; Dmitri V Voronine; Frantisek Sanda; Shaul Mukamel
Journal:  Chem Rev       Date:  2009-06       Impact factor: 60.622

6.  Calculation of vibrational transition frequencies and intensities in water dimer: comparison of different vibrational approaches.

Authors:  Henrik G Kjaergaard; Anna L Garden; Galina M Chaban; R Benny Gerber; Devin A Matthews; John F Stanton
Journal:  J Phys Chem A       Date:  2008-04-12       Impact factor: 2.781

Review 7.  Coherent two-dimensional optical spectroscopy.

Authors:  Minhaeng Cho
Journal:  Chem Rev       Date:  2008-03-26       Impact factor: 60.622

8.  Pairing of isolated nucleic-acid bases in the absence of the DNA backbone.

Authors:  E Nir; K Kleinermanns; M S de Vries
Journal:  Nature       Date:  2000 Dec 21-28       Impact factor: 49.962

9.  Structural assignment of adenine aggregates in CDCl3.

Authors:  Lars Biemann; Thomas Häber; Daniela Maydt; Klaus Schaper; Karl Kleinermanns
Journal:  J Chem Phys       Date:  2008-05-21       Impact factor: 3.488

10.  Fourier transform infrared spectroscopy of 1-cyclohexyluracil aggregates in CDCl(3) solutions.

Authors:  Lars Biemann; Thomas Häber; Karl Kleinermanns
Journal:  J Chem Phys       Date:  2009-03-28       Impact factor: 3.488

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  3 in total

Review 1.  Applications of two-dimensional infrared spectroscopy.

Authors:  Amanda L Le Sueur; Rachel E Horness; Megan C Thielges
Journal:  Analyst       Date:  2015-07-07       Impact factor: 4.616

2.  N-H stretching excitations in adenosine-thymidine base pairs in solution: pair geometries, infrared line shapes, and ultrafast vibrational dynamics.

Authors:  Christian Greve; Nicholas K Preketes; Henk Fidder; Rene Costard; Benjamin Koeppe; Ismael A Heisler; Shaul Mukamel; Friedrich Temps; Erik T J Nibbering; Thomas Elsaesser
Journal:  J Phys Chem A       Date:  2013-01-07       Impact factor: 2.781

3.  Two New Fluorinated Phenol Derivatives Pyridine Schiff Bases: Synthesis, Spectral, Theoretical Characterization, Inclusion in Epichlorohydrin-β-Cyclodextrin Polymer, and Antifungal Effect.

Authors:  Alexander Carreño; Leonardo Rodríguez; Dayán Páez-Hernández; Rudy Martin-Trasanco; César Zúñiga; Diego P Oyarzún; Manuel Gacitúa; Eduardo Schott; Ramiro Arratia-Pérez; Juan A Fuentes
Journal:  Front Chem       Date:  2018-07-30       Impact factor: 5.221

  3 in total

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