Literature DB >> 21962517

A pseudoatomic model of the dynamin polymer identifies a hydrolysis-dependent powerstroke.

Joshua S Chappie1, Jason A Mears, Shunming Fang, Marilyn Leonard, Sandra L Schmid, Ronald A Milligan, Jenny E Hinshaw, Fred Dyda.   

Abstract

The GTPase dynamin catalyzes membrane fission by forming a collar around the necks of clathrin-coated pits, but the specific structural interactions and conformational changes that drive this process remain a mystery. We present the GMPPCP-bound structures of the truncated human dynamin 1 helical polymer at 12.2 Å and a fusion protein, GG, linking human dynamin 1's catalytic G domain to its GTPase effector domain (GED) at 2.2 Å. The structures reveal the position and connectivity of dynamin fragments in the assembled structure, showing that G domain dimers only form between tetramers in sequential rungs of the dynamin helix. Using chemical crosslinking, we demonstrate that dynamin tetramers are made of two dimers, in which the G domain of one molecule interacts in trans with the GED of another. Structural comparison of GG(GMPPCP) to the GG transition-state complex identifies a hydrolysis-dependent powerstroke that may play a role in membrane-remodeling events necessary for fission.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21962517      PMCID: PMC3185303          DOI: 10.1016/j.cell.2011.09.003

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  49 in total

1.  An assembly-incompetent mutant establishes a requirement for dynamin self-assembly in clathrin-mediated endocytosis in vivo.

Authors:  Byeong Doo Song; Defne Yarar; Sandra L Schmid
Journal:  Mol Biol Cell       Date:  2004-03-05       Impact factor: 4.138

2.  Nucleotide-dependent conformational changes in dynamin: evidence for a mechanochemical molecular spring.

Authors:  M H Stowell; B Marks; P Wigge; H T McMahon
Journal:  Nat Cell Biol       Date:  1999-05       Impact factor: 28.824

3.  Real-time detection reveals that effectors couple dynamin's GTP-dependent conformational changes to the membrane.

Authors:  Rajesh Ramachandran; Sandra L Schmid
Journal:  EMBO J       Date:  2007-12-13       Impact factor: 11.598

Review 4.  Dynamin: functional design of a membrane fission catalyst.

Authors:  Sandra L Schmid; Vadim A Frolov
Journal:  Annu Rev Cell Dev Biol       Date:  2011-05-18       Impact factor: 13.827

5.  Three-dimensional reconstruction of dynamin in the constricted state.

Authors:  P Zhang; J E Hinshaw
Journal:  Nat Cell Biol       Date:  2001-10       Impact factor: 28.824

6.  Dynamin self-assembles into rings suggesting a mechanism for coated vesicle budding.

Authors:  J E Hinshaw; S L Schmid
Journal:  Nature       Date:  1995-03-09       Impact factor: 49.962

7.  Conformational changes in Dnm1 support a contractile mechanism for mitochondrial fission.

Authors:  Jason A Mears; Laura L Lackner; Shunming Fang; Elena Ingerman; Jodi Nunnari; Jenny E Hinshaw
Journal:  Nat Struct Mol Biol       Date:  2010-12-19       Impact factor: 15.369

8.  Dnm1 forms spirals that are structurally tailored to fit mitochondria.

Authors:  Elena Ingerman; Edward M Perkins; Michael Marino; Jason A Mears; J Michael McCaffery; Jenny E Hinshaw; Jodi Nunnari
Journal:  J Cell Biol       Date:  2005-09-26       Impact factor: 10.539

9.  Structure of a bacterial dynamin-like protein lipid tube provides a mechanism for assembly and membrane curving.

Authors:  Harry H Low; Carsten Sachse; Linda A Amos; Jan Löwe
Journal:  Cell       Date:  2009-12-24       Impact factor: 41.582

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  111 in total

1.  Structural basis of membrane bending by the N-BAR protein endophilin.

Authors:  Carsten Mim; Haosheng Cui; Joseph A Gawronski-Salerno; Adam Frost; Edward Lyman; Gregory A Voth; Vinzenz M Unger
Journal:  Cell       Date:  2012-03-30       Impact factor: 41.582

Review 2.  Synaptic vesicle endocytosis.

Authors:  Yasunori Saheki; Pietro De Camilli
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-09-01       Impact factor: 10.005

3.  Reduced release probability prevents vesicle depletion and transmission failure at dynamin mutant synapses.

Authors:  Xuelin Lou; Fan Fan; Mirko Messa; Andrea Raimondi; Yumei Wu; Loren L Looger; Shawn M Ferguson; Pietro De Camilli
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

4.  Identification and function of conformational dynamics in the multidomain GTPase dynamin.

Authors:  Saipraveen Srinivasan; Venkatasubramanian Dharmarajan; Dana Kim Reed; Patrick R Griffin; Sandra L Schmid
Journal:  EMBO J       Date:  2016-01-18       Impact factor: 11.598

5.  Affinity Purification and Functional Characterization of Dynamin-Related Protein 1.

Authors:  Ryan W Clinton; Brianna L Bauer; Jason A Mears
Journal:  Methods Mol Biol       Date:  2020

6.  Isolation and Analysis of Mitochondrial Fission Enzyme DNM1 from Saccharomyces cerevisiae.

Authors:  Nolan W Kennedy; Lora K Picton; R Blake Hill
Journal:  Methods Mol Biol       Date:  2020

7.  Bending "on the rocks"--a cocktail of biophysical modules to build endocytic pathways.

Authors:  Ludger Johannes; Christian Wunder; Patricia Bassereau
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-01-01       Impact factor: 10.005

Review 8.  Building a fission machine--structural insights into dynamin assembly and activation.

Authors:  Joshua S Chappie; Fred Dyda
Journal:  J Cell Sci       Date:  2013-06-18       Impact factor: 5.285

9.  Synthesis of Dynole 34-2, Dynole 2-24 and Dyngo 4a for investigating dynamin GTPase.

Authors:  Mark J Robertson; Fiona M Deane; Phillip J Robinson; Adam McCluskey
Journal:  Nat Protoc       Date:  2014-03-20       Impact factor: 13.491

10.  Structural insights into oligomerization and mitochondrial remodelling of dynamin 1-like protein.

Authors:  Chris Fröhlich; Stefan Grabiger; David Schwefel; Katja Faelber; Eva Rosenbaum; Jason Mears; Oliver Rocks; Oliver Daumke
Journal:  EMBO J       Date:  2013-04-12       Impact factor: 11.598

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