Literature DB >> 15250699

QM/MM determination of kinetic isotope effects for COMT-catalyzed methyl transfer does not support compression hypothesis.

Giuseppe D Ruggiero1, Ian H Williams, Maite Roca, Vicent Moliner, Iñaki Tuñón.   

Abstract

Secondary alpha-D3 kinetic isotope effects calculated by the hybrid AM1/TIP3P/CHARMM method for the reaction of S-adenosylmethionine with catecholate anion in aqueous solution and catalyzed by rat liver catechol O-methyltransferase at 298 K are 0.94 and 0.85, respectively, in good accord with experiment. The large inverse effect for the enzymatic reaction is not due to compression but arises from significant increases in the stretching and bending force constants involving the isotopically substituted atoms of the transferring methyl group as between the reactant complex and the transition structure, larger than for the reaction in water.

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Year:  2004        PMID: 15250699     DOI: 10.1021/ja048055e

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  18 in total

1.  Taking Ockham's razor to enzyme dynamics and catalysis.

Authors:  David R Glowacki; Jeremy N Harvey; Adrian J Mulholland
Journal:  Nat Chem       Date:  2012-01-29       Impact factor: 24.427

2.  Enzymatic methyl transfer: role of an active site residue in generating active site compaction that correlates with catalytic efficiency.

Authors:  Jianyu Zhang; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2011-10-10       Impact factor: 15.419

3.  Transition state for the NSD2-catalyzed methylation of histone H3 lysine 36.

Authors:  Myles B Poulin; Jessica L Schneck; Rosalie E Matico; Patrick J McDevitt; Michael J Huddleston; Wangfang Hou; Neil W Johnson; Sara H Thrall; Thomas D Meek; Vern L Schramm
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

4.  Ab initio quantum mechanical/molecular mechanical molecular dynamics simulation of enzyme catalysis: the case of histone lysine methyltransferase SET7/9.

Authors:  Shenglong Wang; Po Hu; Yingkai Zhang
Journal:  J Phys Chem B       Date:  2007-03-22       Impact factor: 2.991

5.  Human DNMT1 transition state structure.

Authors:  Quan Du; Zhen Wang; Vern L Schramm
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-29       Impact factor: 11.205

6.  Revealing quantum mechanical effects in enzyme catalysis with large-scale electronic structure simulation.

Authors:  Zhongyue Yang; Rimsha Mehmood; Mengyi Wang; Helena W Qi; Adam H Steeves; Heather J Kulik
Journal:  React Chem Eng       Date:  2018-11-29       Impact factor: 4.239

7.  Large-scale QM/MM free energy simulations of enzyme catalysis reveal the influence of charge transfer.

Authors:  Heather J Kulik
Journal:  Phys Chem Chem Phys       Date:  2018-08-08       Impact factor: 3.676

8.  Methyltransferases do not work by compression, cratic, or desolvation effects, but by electrostatic preorganization.

Authors:  Jeronimo Lameira; Ram Prasad Bora; Zhen T Chu; Arieh Warshel
Journal:  Proteins       Date:  2015-01-07

9.  Kinetic Isotope Effects and Transition State Structure for Human Phenylethanolamine N-Methyltransferase.

Authors:  Christopher F Stratton; Myles B Poulin; Quan Du; Vern L Schramm
Journal:  ACS Chem Biol       Date:  2016-12-28       Impact factor: 5.100

10.  Catalysis: transition-state molecular recognition?

Authors:  Ian H Williams
Journal:  Beilstein J Org Chem       Date:  2010-11-03       Impact factor: 2.883

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