Literature DB >> 19954239

Paramagnetic 13C and 15N NMR analyses of the push and pull effects in cytochrome c peroxidase and Coprinus cinereus peroxidase variants: functional roles of highly conserved amino acids around heme.

Daisuke Nonaka1, Hiroyuki Wariishi, Karen G Welinder, Hiroshi Fujii.   

Abstract

Paramagnetic (13)C and (15)N nuclear magnetic resonance (NMR) spectroscopy of heme-bound cyanide ((13)C(15)N) was applied to 11 cytochrome c peroxidase (CcP) and Coprinus cinereus peroxidase (CIP) mutants to investigate contributions to the push and pull effects of conserved amino acids around heme. The (13)C and (15)N NMR data for the distal His and Arg mutants indicated that distal His is the key amino acid residue creating the strong pull effect and that distal Arg assists. The mutation of distal Trp of CcP to Phe, the amino acid at this position in CIP, changed the push and pull effects so they resembled those of CIP, whereas the mutation of distal Phe of CIP to Trp changed this mutant to become CcP-like. The (13)C NMR shifts for the proximal Asp mutants clearly showed that the proximal Asp-His hydrogen bonding strengthens the push effect. However, even in the absence of a hydrogen bond, the push effect of proximal His in peroxidase is significantly stronger than in globins. Comparison of these NMR data with the compound I formation rate constants and crystal structures of these mutants showed that (1) the base catalysis of the distal His is more critical for rapid compound I formation than its acid catalysis, (2) the primary function of the distal Arg is to maintain the distal heme pocket in favor of rapid compound I formation via hydrogen bonding, and (3) the push effect is the major contributor to the differential rates of compound I formation in wild-type peroxidases.

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Year:  2010        PMID: 19954239     DOI: 10.1021/bi9017285

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  5 in total

1.  Functional consequences of the creation of an Asp-His-Fe triad in a 3/3 globin.

Authors:  Edward L D'Antonio; Jennifer D'Antonio; Vesna de Serrano; Hanna Gracz; Matthew K Thompson; Reza A Ghiladi; Edmond F Bowden; Stefan Franzen
Journal:  Biochemistry       Date:  2011-10-13       Impact factor: 3.162

2.  Mechanistic insights into the chemistry of compound I formation in heme peroxidases: quantum chemical investigations of cytochrome c peroxidase.

Authors:  Mohamed M Aboelnga
Journal:  RSC Adv       Date:  2022-05-23       Impact factor: 4.036

3.  Modulating the cobalt redox potential through imidazole hydrogen bonding interactions in a supramolecular biomimetic protein-cofactor model.

Authors:  Marjorie Sonnay; Thomas Fox; Olivier Blacque; Felix Zelder
Journal:  Chem Sci       Date:  2016-02-23       Impact factor: 9.825

4.  Rewiring the "Push-Pull" Catalytic Machinery of a Heme Enzyme Using an Expanded Genetic Code.

Authors:  Mary Ortmayer; Karl Fisher; Jaswir Basran; Emmanuel M Wolde-Michael; Derren J Heyes; Colin Levy; Sarah L Lovelock; J L Ross Anderson; Emma L Raven; Sam Hay; Stephen E J Rigby; Anthony P Green
Journal:  ACS Catal       Date:  2020-01-29       Impact factor: 13.084

5.  A Noncanonical Tryptophan Analogue Reveals an Active Site Hydrogen Bond Controlling Ferryl Reactivity in a Heme Peroxidase.

Authors:  Mary Ortmayer; Florence J Hardy; Matthew G Quesne; Karl Fisher; Colin Levy; Derren J Heyes; C Richard A Catlow; Sam P de Visser; Stephen E J Rigby; Sam Hay; Anthony P Green
Journal:  JACS Au       Date:  2021-05-14
  5 in total

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