Literature DB >> 3051385

How do enzymes work?

J Kraut1.   

Abstract

The principle of transition-state stabilization asserts that the occurrence of enzymic catalysis is equivalent to saying that an enzyme binds the transition state much more strongly than it binds the ground-state reactants. An outline of the origin and gradual acceptance of this idea is presented, and elementary transition-state theory is reviewed. It is pointed out that a misconception about the theory has led to oversimplification of the accepted expression relating catalysis and binding, and an amended expression is given. Some implications of the transition-state binding principle are then explored. The amended expression suggests that internal molecular dynamics may also play a role in enzymic catalysis. Although such effects probably do not make a major contribution, their magnitude is completely unknown. Two examples of recent advances due to application of the transition-state binding principle are reviewed, one pertaining to the zinc protease mechanism and the other to the generation of catalytic antibodies.

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Year:  1988        PMID: 3051385     DOI: 10.1126/science.3051385

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  42 in total

1.  Changes in protein conformational mobility upon activation of extracellular regulated protein kinase-2 as detected by hydrogen exchange.

Authors:  A N Hoofnagle; K A Resing; E J Goldsmith; N G Ahn
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  Enzymatic conformational fluctuations along the reaction coordinate of cytidine deaminase.

Authors:  Ryan C Noonan; Charles W Carter CW; Carey K Bagdassarian
Journal:  Protein Sci       Date:  2002-06       Impact factor: 6.725

3.  Vibrationally enhanced tunneling as a mechanism for enzymatic hydrogen transfer.

Authors:  W J Bruno; W Bialek
Journal:  Biophys J       Date:  1992-09       Impact factor: 4.033

4.  Biochemical basis for whole-cell uptake kinetics: specific affinity, oligotrophic capacity, and the meaning of the michaelis constant.

Authors:  D K Button
Journal:  Appl Environ Microbiol       Date:  1991-07       Impact factor: 4.792

Review 5.  Multidimensional tunneling, recrossing, and the transmission coefficient for enzymatic reactions.

Authors:  Jingzhi Pu; Jiali Gao; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

6.  Intersubunit signaling in glutamate-1-semialdehyde-aminomutase.

Authors:  J Stetefeld; M Jenny; P Burkhard
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-05       Impact factor: 11.205

7.  Modulation of individual steps in group I intron catalysis by a peripheral metal ion.

Authors:  Marcello Forconi; Joseph A Piccirilli; Daniel Herschlag
Journal:  RNA       Date:  2007-08-24       Impact factor: 4.942

8.  Thermodynamic framework for identifying free energy inventories of enzyme catalytic cycles.

Authors:  Stephen D Fried; Steven G Boxer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-09       Impact factor: 11.205

9.  A general assay for antibody catalysis using acridone as a fluorescent tag.

Authors:  J L Reymond; T Koch; J Schröer; E Tierney
Journal:  Proc Natl Acad Sci U S A       Date:  1996-04-30       Impact factor: 11.205

10.  Using empirical phase diagrams to understand the role of intramolecular dynamics in immunoglobulin G stability.

Authors:  Joshua D Ramsey; Michelle L Gill; Tim J Kamerzell; E Shane Price; Sangeeta B Joshi; Steven M Bishop; Cynthia N Oliver; C Russell Middaugh
Journal:  J Pharm Sci       Date:  2009-07       Impact factor: 3.534

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