Literature DB >> 21948845

Recovery of as-yet-uncultured soil acidobacteria on dilute solid media.

Isabelle F George1, Manuela Hartmann, Mark R Liles, Spiros N Agathos.   

Abstract

A growing number of Acidobacteria strains have been isolated from environments worldwide, with most isolates derived from acidic samples and affiliated with subdivision 1. We recovered 18 Acidobacteria strains from an alkaline soil, among which 11 belonged to the previously uncultured subdivision 6. Various medium formulations were tested for their effects on Acidobacteria growth.

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Year:  2011        PMID： 21948845      PMCID： PMC3209007          DOI： 10.1128/AEM.05956-11

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  32 in total

1.  Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia.

Authors:  Peter H Janssen; Penelope S Yates; Bronwyn E Grinton; Paul M Taylor; Michelle Sait
Journal:  Appl Environ Microbiol       Date:  2002-05       Impact factor: 4.792

2.  Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys.

Authors:  Michelle Sait; Philip Hugenholtz; Peter H Janssen
Journal:  Environ Microbiol       Date:  2002-11       Impact factor: 5.491

3.  Laboratory cultivation of widespread and previously uncultured soil bacteria.

Authors:  Shayne J Joseph; Philip Hugenholtz; Parveen Sangwan; Catherine A Osborne; Peter H Janssen
Journal:  Appl Environ Microbiol       Date:  2003-12       Impact factor: 4.792

4.  Liquid serial dilution is inferior to solid media for isolation of cultures representative of the phylum-level diversity of soil bacteria.

Authors:  Liesbeth Schoenborn; Penelope S Yates; Bronwyn E Grinton; Philip Hugenholtz; Peter H Janssen
Journal:  Appl Environ Microbiol       Date:  2004-07       Impact factor: 4.792

5.  Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobacteria occurring in soil.

Authors:  Michelle Sait; Kathryn E R Davis; Peter H Janssen
Journal:  Appl Environ Microbiol       Date:  2006-03       Impact factor: 4.792

6.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.

Authors:  Naomi L Ward; Jean F Challacombe; Peter H Janssen; Bernard Henrissat; Pedro M Coutinho; Martin Wu; Gary Xie; Daniel H Haft; Michelle Sait; Jonathan Badger; Ravi D Barabote; Brent Bradley; Thomas S Brettin; Lauren M Brinkac; David Bruce; Todd Creasy; Sean C Daugherty; Tanja M Davidsen; Robert T DeBoy; J Chris Detter; Robert J Dodson; A Scott Durkin; Anuradha Ganapathy; Michelle Gwinn-Giglio; Cliff S Han; Hoda Khouri; Hajnalka Kiss; Sagar P Kothari; Ramana Madupu; Karen E Nelson; William C Nelson; Ian Paulsen; Kevin Penn; Qinghu Ren; M J Rosovitz; Jeremy D Selengut; Susmita Shrivastava; Steven A Sullivan; Roxanne Tapia; L Sue Thompson; Kisha L Watkins; Qi Yang; Chunhui Yu; Nikhat Zafar; Liwei Zhou; Cheryl R Kuske
Journal:  Appl Environ Microbiol       Date:  2009-02-05       Impact factor: 4.792

Review 7.  Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.

Authors:  P Hugenholtz; B M Goebel; N R Pace
Journal:  J Bacteriol       Date:  1998-09       Impact factor: 3.490

8.  Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer.

Authors:  J D Coates; D J Ellis; C V Gaw; D R Lovley
Journal:  Int J Syst Bacteriol       Date:  1999-10

9.  Telmatobacter bradus gen. nov., sp. nov., a cellulolytic facultative anaerobe from subdivision 1 of the Acidobacteria, and emended description of Acidobacterium capsulatum Kishimoto et al. 1991.

Authors:  Timofey A Pankratov; Lilia A Kirsanova; Elena N Kaparullina; Vadim V Kevbrin; Svetlana N Dedysh
Journal:  Int J Syst Evol Microbiol       Date:  2011-04-01       Impact factor: 2.747

10.  Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria.

Authors:  Stephanie A Eichorst; John A Breznak; Thomas M Schmidt
Journal:  Appl Environ Microbiol       Date:  2007-02-09       Impact factor: 4.792
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  17 in total

1.  Diluted Luria-Bertani medium vs. sewage sludge as growth media: comparison of community structure and diversity in the culturable bacteria.

Authors:  Kazuo Yamamoto; Shotaro Toya; Sarah Sabidi; Yuki Hoshiko; Toshinari Maeda
Journal:  Appl Microbiol Biotechnol       Date:  2021-04-15       Impact factor: 4.813

2.  Isolation of a substantial proportion of forest soil bacterial communities detected via pyrotag sequencing.

Authors:  David VanInsberghe; Martin Hartmann; Gordon R Stewart; William W Mohn
Journal:  Appl Environ Microbiol       Date:  2013-01-11       Impact factor: 4.792

3.  Spatial patterns of microbial diversity and activity in an aged creosote-contaminated site.

Authors:  Shinjini Mukherjee; Heli Juottonen; Pauli Siivonen; Cosme Lloret Quesada; Pirjo Tuomi; Pertti Pulkkinen; Kim Yrjälä
Journal:  ISME J       Date:  2014-08-08       Impact factor: 10.302

4.  Identification of bacteria associated with underground parts of Crocus sativus by 16S rRNA gene targeted metagenomic approach.

Authors:  Sheetal Ambardar; Naseer Sangwan; A Manjula; J Rajendhran; P Gunasekaran; Rup Lal; Jyoti Vakhlu
Journal:  World J Microbiol Biotechnol       Date:  2014-07-03       Impact factor: 3.312

5.  Editorial: Acidobacteria - Towards Unraveling the Secrets of a Widespread, Though Enigmatic, Phylum.

Authors:  Katharina J Huber; Michael Pester; Stephanie A Eichorst; Acacio A Navarrete; Bärbel U Foesel
Journal:  Front Microbiol       Date:  2022-06-24       Impact factor: 6.064

6.  Geothrix fermentans secretes two different redox-active compounds to utilize electron acceptors across a wide range of redox potentials.

Authors:  Misha G Mehta-Kolte; Daniel R Bond
Journal:  Appl Environ Microbiol       Date:  2012-07-27       Impact factor: 4.792

7.  Terracidiphilus gabretensis gen. nov., sp. nov., an Abundant and Active Forest Soil Acidobacterium Important in Organic Matter Transformation.

Authors:  Paula García-Fraile; Oldrich Benada; Tomáš Cajthaml; Petr Baldrian; Salvador Lladó
Journal:  Appl Environ Microbiol       Date:  2015-11-06       Impact factor: 4.792

8.  Experimental Setup for a Diffusion Bioreactor to Isolate Unculturable Soil Bacteria.

Authors:  Dhiraj Kumar Chaudhary; Jaisoo Kim
Journal:  Bio Protoc       Date:  2019-10-05

9.  Metagenomic insights into anaerobic metabolism along an Arctic peat soil profile.

Authors:  David A Lipson; John Matthew Haggerty; Archana Srinivas; Theodore K Raab; Shashank Sathe; Elizabeth A Dinsdale
Journal:  PLoS One       Date:  2013-05-31       Impact factor: 3.240

10.  The rhizosphere selects for particular groups of acidobacteria and verrucomicrobia.

Authors:  Ulisses Nunes da Rocha; Caroline M Plugge; Isabelle George; Jan Dirk van Elsas; Leonard Simon van Overbeek
Journal:  PLoS One       Date:  2013-12-13       Impact factor: 3.240
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