Literature DB >> 15240320

Liquid serial dilution is inferior to solid media for isolation of cultures representative of the phylum-level diversity of soil bacteria.

Liesbeth Schoenborn1, Penelope S Yates, Bronwyn E Grinton, Philip Hugenholtz, Peter H Janssen.   

Abstract

Representatives of only four well-characterized bacterial phyla were isolated from a pasture soil by using liquid serial dilution culture. In contrast, members of Acidobacteria, Verrucomicrobia, and Gemmatimonadetes and of other poorly represented bacterial lineages were isolated in earlier experiments with solidified versions of the same media. We conclude that, contrary to expectation, liquid serial dilution culture is inferior to culturing on solid media for isolating representatives of many bacterial phyla from soil.

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Year:  2004        PMID: 15240320      PMCID: PMC444819          DOI: 10.1128/AEM.70.7.4363-4366.2004

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  19 in total

1.  Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia.

Authors:  Peter H Janssen; Penelope S Yates; Bronwyn E Grinton; Paul M Taylor; Michelle Sait
Journal:  Appl Environ Microbiol       Date:  2002-05       Impact factor: 4.792

2.  Molecular monitoring of an uncultured group of the class Actinobacteria in two terrestrial environments.

Authors:  H Rheims; A Felske; S Seufert; E Stackebrandt
Journal:  J Microbiol Methods       Date:  1999-05       Impact factor: 2.363

3.  Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys.

Authors:  Michelle Sait; Philip Hugenholtz; Peter H Janssen
Journal:  Environ Microbiol       Date:  2002-11       Impact factor: 5.491

4.  Laboratory cultivation of widespread and previously uncultured soil bacteria.

Authors:  Shayne J Joseph; Philip Hugenholtz; Parveen Sangwan; Catherine A Osborne; Peter H Janssen
Journal:  Appl Environ Microbiol       Date:  2003-12       Impact factor: 4.792

5.  Candidate division BD: phylogeny, distribution and abundance in soil ecosystems.

Authors:  Daniel L Mummey; Peter D Stahl
Journal:  Syst Appl Microbiol       Date:  2003-06       Impact factor: 4.022

6.  Cyclic AMP and acyl homoserine lactones increase the cultivation efficiency of heterotrophic bacteria from the central Baltic Sea.

Authors:  Alke Bruns; Heribert Cypionka; Jörg Overmann
Journal:  Appl Environ Microbiol       Date:  2002-08       Impact factor: 4.792

Review 7.  Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.

Authors:  P Hugenholtz; B M Goebel; N R Pace
Journal:  J Bacteriol       Date:  1998-09       Impact factor: 3.490

8.  Factors influencing the cultivability of lake water bacteria.

Authors:  I Bussmann; B Philipp; B Schink
Journal:  J Microbiol Methods       Date:  2001-10       Impact factor: 2.363

9.  Novel anaerobic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil.

Authors:  P H Janssen; A Schuhmann; E Mörschel; F A Rainey
Journal:  Appl Environ Microbiol       Date:  1997-04       Impact factor: 4.792

10.  Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval.

Authors:  R Grosskopf; P H Janssen; W Liesack
Journal:  Appl Environ Microbiol       Date:  1998-03       Impact factor: 4.792

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  29 in total

1.  Development of a direct isolation procedure for free-living diazotrophs under controlled hypoxic conditions.

Authors:  Babur S Mirza; Jorge L M Rodrigues
Journal:  Appl Environ Microbiol       Date:  2012-06-01       Impact factor: 4.792

2.  Acidobacteria in freshwater ponds at Doñana National Park, Spain.

Authors:  Johannes Zimmermann; M Carmen Portillo; Laura Serrano; Wolfgang Ludwig; Juan M Gonzalez
Journal:  Microb Ecol       Date:  2011-12-15       Impact factor: 4.552

3.  Recovery of as-yet-uncultured soil acidobacteria on dilute solid media.

Authors:  Isabelle F George; Manuela Hartmann; Mark R Liles; Spiros N Agathos
Journal:  Appl Environ Microbiol       Date:  2011-09-23       Impact factor: 4.792

4.  Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria.

Authors:  Kathryn E R Davis; Shayne J Joseph; Peter H Janssen
Journal:  Appl Environ Microbiol       Date:  2005-02       Impact factor: 4.792

5.  Recurring seasonal dynamics of microbial communities in stream habitats.

Authors:  Meredith A J Hullar; Louis A Kaplan; David A Stahl
Journal:  Appl Environ Microbiol       Date:  2006-01       Impact factor: 4.792

6.  Genetic diversity of rhizobia associated with Acacia longifolia in two stages of invasion of coastal sand dunes.

Authors:  Susana Rodríguez-Echeverría; João A Crisóstomo; Helena Freitas
Journal:  Appl Environ Microbiol       Date:  2007-06-01       Impact factor: 4.792

7.  Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobacteria occurring in soil.

Authors:  Michelle Sait; Kathryn E R Davis; Peter H Janssen
Journal:  Appl Environ Microbiol       Date:  2006-03       Impact factor: 4.792

8.  Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.

Authors:  Naomi L Ward; Jean F Challacombe; Peter H Janssen; Bernard Henrissat; Pedro M Coutinho; Martin Wu; Gary Xie; Daniel H Haft; Michelle Sait; Jonathan Badger; Ravi D Barabote; Brent Bradley; Thomas S Brettin; Lauren M Brinkac; David Bruce; Todd Creasy; Sean C Daugherty; Tanja M Davidsen; Robert T DeBoy; J Chris Detter; Robert J Dodson; A Scott Durkin; Anuradha Ganapathy; Michelle Gwinn-Giglio; Cliff S Han; Hoda Khouri; Hajnalka Kiss; Sagar P Kothari; Ramana Madupu; Karen E Nelson; William C Nelson; Ian Paulsen; Kevin Penn; Qinghu Ren; M J Rosovitz; Jeremy D Selengut; Susmita Shrivastava; Steven A Sullivan; Roxanne Tapia; L Sue Thompson; Kisha L Watkins; Qi Yang; Chunhui Yu; Nikhat Zafar; Liwei Zhou; Cheryl R Kuske
Journal:  Appl Environ Microbiol       Date:  2009-02-05       Impact factor: 4.792

9.  A comparison of methods for total community DNA preservation and extraction from various thermal environments.

Authors:  Kendra R Mitchell; Cristina D Takacs-Vesbach
Journal:  J Ind Microbiol Biotechnol       Date:  2008-07-17       Impact factor: 3.346

10.  Streptomyces adelaidensis sp. nov., an actinobacterium isolated from the root of Callitris preissii with potential for plant growth-promoting properties.

Authors:  Onuma Kaewkla; Chanwit Suriyachadkun; Christopher Milton Mathew Franco
Journal:  Arch Microbiol       Date:  2021-04-19       Impact factor: 2.552

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