Literature DB >> 33654882

Experimental Setup for a Diffusion Bioreactor to Isolate Unculturable Soil Bacteria.

Dhiraj Kumar Chaudhary1, Jaisoo Kim1.   

Abstract

Unculturable bacteria are those bacteria which proliferate in their native habitat but unable to grow or thrive in the normal laboratory media and conditions. The molecular techniques have revealed the significance of these uncultured bacteria in terms of their functional diversity and potential to produce secondary metabolites. To achieve these benefits, scientists have attempted to isolate and cultivate unculturable bacteria in the laboratory using transwell plates, optical tweezers, laser microdissection, microbioreactors, and diffusions bioreactors. However, these techniques are still inadequate to resolve the difficulties of cultivating unculturable bacteria. Therefore, it is essential to develop new cultivation method that enables growth of diverse range of bacteria in the laboratory conditions. Diffusion bioreactor is a membrane bound chamber which allows microbes to proliferate in their native environment by providing the excess to naturally occurring nutrients and signaling compounds. This paper presents efficient and reliable protocol to construct a diffusion bioreactor and its utilization to isolate and cultivate unculturable soil bacteria in laboratory.
Copyright © 2019 The Authors; exclusive licensee Bio-protocol LLC.

Entities:  

Keywords:  Cultivation technique; Diffusion bioreactor; Microbial ecology; Soil; Unculturable bacteria

Year:  2019        PMID: 33654882      PMCID: PMC7853981          DOI: 10.21769/BioProtoc.3388

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  21 in total

1.  Isolating "uncultivable" microorganisms in pure culture in a simulated natural environment.

Authors:  T Kaeberlein; K Lewis; S S Epstein
Journal:  Science       Date:  2002-05-10       Impact factor: 47.728

2.  Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys.

Authors:  Michelle Sait; Philip Hugenholtz; Peter H Janssen
Journal:  Environ Microbiol       Date:  2002-11       Impact factor: 5.491

3.  Laboratory cultivation of widespread and previously uncultured soil bacteria.

Authors:  Shayne J Joseph; Philip Hugenholtz; Parveen Sangwan; Catherine A Osborne; Peter H Janssen
Journal:  Appl Environ Microbiol       Date:  2003-12       Impact factor: 4.792

4.  Growing unculturable bacteria.

Authors:  Eric J Stewart
Journal:  J Bacteriol       Date:  2012-06-01       Impact factor: 3.490

Review 5.  Cultivation of unculturable soil bacteria.

Authors:  Van H T Pham; Jaisoo Kim
Journal:  Trends Biotechnol       Date:  2012-07-07       Impact factor: 19.536

6.  Microcolony cultivation on a soil substrate membrane system selects for previously uncultured soil bacteria.

Authors:  Belinda C Ferrari; Svend J Binnerup; Michael Gillings
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

7.  Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes.

Authors:  Jeremy A Frank; Claudia I Reich; Shobha Sharma; Jon S Weisbaum; Brenda A Wilson; Gary J Olsen
Journal:  Appl Environ Microbiol       Date:  2008-02-22       Impact factor: 4.792

8.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

9.  Development of a novel cultivation technique for uncultured soil bacteria.

Authors:  Dhiraj Kumar Chaudhary; Altankhuu Khulan; Jaisoo Kim
Journal:  Sci Rep       Date:  2019-04-30       Impact factor: 4.379

10.  Pyrosequence read length of 16S rRNA gene affects phylogenetic assignment of plant-associated bacteria.

Authors:  Takashi Okubo; Seishi Ikeda; Akifumi Yamashita; Kimihiro Terasawa; Kiwamu Minamisawa
Journal:  Microbes Environ       Date:  2012       Impact factor: 2.912

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