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Literature DB >> 21942365

Genomic analysis at the single-cell level.

Tomer Kalisky¹, Paul Blainey, Stephen R Quake.

Abstract

Studying complex biological systems such as a developing embryo, a tumor, or a microbial ecosystem often involves understanding the behavior and heterogeneity of the individual cells that constitute the system and their interactions. In this review, we discuss a variety of approaches to single-cell genomic analysis.

Entities: Chemical

Mesh：

Year: 2011 PMID： 21942365 PMCID： PMC3878048 DOI： 10.1146/annurev-genet-102209-163607

Source DB: PubMed Journal: Annu Rev Genet ISSN： 0066-4197 Impact factor: 16.830

101 in total

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3. Immunology. Flow cytometry, amped up.

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Authors: Fuchou Tang; Catalin Barbacioru; Siqin Bao; Caroline Lee; Ellen Nordman; Xiaohui Wang; Kaiqin Lao; M Azim Surani
Journal: Cell Stem Cell Date: 2010-05-07 Impact factor: 24.633

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Journal: Mol Cell Date: 1998-10 Impact factor: 17.970

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7. Cell lineage analysis of a mouse tumor.

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Journal: Cancer Res Date: 2008-07-15 Impact factor: 12.701

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Authors: G J Spangrude; S Heimfeld; I L Weissman
Journal: Science Date: 1988-07-01 Impact factor: 47.728

9. Stochastic mRNA synthesis in mammalian cells.

Authors: Arjun Raj; Charles S Peskin; Daniel Tranchina; Diana Y Vargas; Sanjay Tyagi
Journal: PLoS Biol Date: 2006-10 Impact factor: 8.029

10. Digital PCR provides sensitive and absolute calibration for high throughput sequencing.

Authors: Richard A White; Paul C Blainey; H Christina Fan; Stephen R Quake
Journal: BMC Genomics Date: 2009-03-19 Impact factor: 3.969

77 in total

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2. Calibrating genomic and allelic coverage bias in single-cell sequencing.

Authors: Cheng-Zhong Zhang; Viktor A Adalsteinsson; Joshua Francis; Hauke Cornils; Joonil Jung; Cecile Maire; Keith L Ligon; Matthew Meyerson; J Christopher Love
Journal: Nat Commun Date: 2015-04-16 Impact factor: 14.919

Review 3. Single-cell sequencing-based technologies will revolutionize whole-organism science.

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Journal: Nat Rev Genet Date: 2013-07-30 Impact factor: 53.242

Review 4. Systems-level analysis of innate immunity.

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6. Single-cell detection of mRNA expression using nanofountain-probe electroporated molecular beacons.

Authors: Juan P Giraldo-Vela; Wonmo Kang; Rebecca L McNaughton; Xuemei Zhang; Brian M Wile; Andrew Tsourkas; Gang Bao; Horacio D Espinosa
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7. Inferring epigenetic dynamics from kin correlations.

Authors: Sahand Hormoz; Nicolas Desprat; Boris I Shraiman
Journal: Proc Natl Acad Sci U S A Date: 2015-04-22 Impact factor: 11.205

Review 8. Challenges of metagenomics and single-cell genomics approaches for exploring cyanobacterial diversity.

Authors: Michelle Davison; Eric Hall; Richard Zare; Devaki Bhaya
Journal: Photosynth Res Date: 2014-12-17 Impact factor: 3.573

Review 9. Targeting the pancreatic β-cell to treat diabetes.

Authors: Amedeo Vetere; Amit Choudhary; Sean M Burns; Bridget K Wagner
Journal: Nat Rev Drug Discov Date: 2014-02-14 Impact factor: 84.694

10. Genomic DNA extraction from cells by electroporation on an integrated microfluidic platform.

Authors: Tao Geng; Ning Bao; Nammalwar Sriranganathanw; Liwu Li; Chang Lu
Journal: Anal Chem Date: 2012-10-23 Impact factor: 6.986