Literature DB >> 10871363

Dbp10p, a putative RNA helicase from Saccharomyces cerevisiae, is required for ribosome biogenesis.

F Burger1, M C Daugeron, P Linder.   

Abstract

Ribosome biogenesis requires, in addition to rRNA molecules and ribosomal proteins, a multitude of trans-acting factors. Recently it has become clear that in the yeast Saccharomyces cerevisiae many RNA helicases of the DEAD-box and related families are involved in ribosome biogenesis. Here we show that the previously uncharacterised open reading frame YDL031w (renamed DBP10 for DEAD-box protein 10) encodes an essential putative RNA helicase that is required for accurate ribosome biogenesis. Genetic depletion of Dbp10p results in a deficit in 60S ribosomal subunits and an accumulation of half-mer polysomes. Furthermore, pulse-chase analyses of pre-rRNA processing reveal a strong delay in the maturation of 27SB pre-rRNA intermediates into 25S rRNA and 7S pre-rRNA. Northern blot analyses indicate that this delay leads to higher steady-state levels of 27SB species and reduced steady-state levels of 7S pre-rRNA and 25S/5.8S mature rRNAs, thus explaining the final deficit in 60S subunit and the formation of half-mer polysomes. Consistent with a direct role in ribosome biogenesis, Dbp10p was found to be located predominantly in the nucleolus.

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Year:  2000        PMID: 10871363      PMCID: PMC102738          DOI: 10.1093/nar/28.12.2315

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  53 in total

Review 1.  Protein trans-acting factors involved in ribosome biogenesis in Saccharomyces cerevisiae.

Authors:  D Kressler; P Linder; J de La Cruz
Journal:  Mol Cell Biol       Date:  1999-12       Impact factor: 4.272

2.  Transcriptional elements involved in the repression of ribosomal protein synthesis.

Authors:  B Li; C R Nierras; J R Warner
Journal:  Mol Cell Biol       Date:  1999-08       Impact factor: 4.272

Review 3.  The economics of ribosome biosynthesis in yeast.

Authors:  J R Warner
Journal:  Trends Biochem Sci       Date:  1999-11       Impact factor: 13.807

4.  Elevated recombination rates in transcriptionally active DNA.

Authors:  B J Thomas; R Rothstein
Journal:  Cell       Date:  1989-02-24       Impact factor: 41.582

5.  Spb1p is a yeast nucleolar protein associated with Nop1p and Nop58p that is able to bind S-adenosyl-L-methionine in vitro.

Authors:  L Pintard; D Kressler; B Lapeyre
Journal:  Mol Cell Biol       Date:  2000-02       Impact factor: 4.272

6.  Spb1p is a putative methyltransferase required for 60S ribosomal subunit biogenesis in Saccharomyces cerevisiae.

Authors:  D Kressler; M Rojo; P Linder; J Cruz
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

7.  Synthetic lethality with conditional dbp6 alleles identifies rsa1p, a nucleoplasmic protein involved in the assembly of 60S ribosomal subunits.

Authors:  D Kressler; M Doère; M Rojo; P Linder
Journal:  Mol Cell Biol       Date:  1999-12       Impact factor: 4.272

Review 8.  Ribosome synthesis in Saccharomyces cerevisiae.

Authors:  J Venema; D Tollervey
Journal:  Annu Rev Genet       Date:  1999       Impact factor: 16.830

9.  Maturation of ribosomes in yeast. II. Position of the low molecular weight rRNA species in the maturation process.

Authors:  J Trapman; R J Planta; H A Raué
Journal:  Biochim Biophys Acta       Date:  1976-09-06

10.  Depletion of yeast ribosomal proteins L16 or rp59 disrupts ribosome assembly.

Authors:  M Moritz; A G Paulovich; Y F Tsay; J L Woolford
Journal:  J Cell Biol       Date:  1990-12       Impact factor: 10.539

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  27 in total

1.  Characterization and mutational analysis of yeast Dbp8p, a putative RNA helicase involved in ribosome biogenesis.

Authors:  M C Daugeron; P Linder
Journal:  Nucleic Acids Res       Date:  2001-03-01       Impact factor: 16.971

Review 2.  Powering through ribosome assembly.

Authors:  Bethany S Strunk; Katrin Karbstein
Journal:  RNA       Date:  2009-10-22       Impact factor: 4.942

Review 3.  DExD/H-box RNA helicases in ribosome biogenesis.

Authors:  Roman Martin; Annika U Straub; Carmen Doebele; Markus T Bohnsack
Journal:  RNA Biol       Date:  2012-08-24       Impact factor: 4.652

4.  Saccharomyces cerevisiae nucleolar protein Nop7p is necessary for biogenesis of 60S ribosomal subunits.

Authors:  Cynthia C Adams; Jelena Jakovljevic; Judibelle Roman; Piyanun Harnpicharnchai; John L Woolford
Journal:  RNA       Date:  2002-02       Impact factor: 4.942

5.  Assembly of Saccharomyces cerevisiae 60S ribosomal subunits: role of factors required for 27S pre-rRNA processing.

Authors:  Aarti Sahasranaman; Jill Dembowski; John Strahler; Philip Andrews; Janine Maddock; John L Woolford
Journal:  EMBO J       Date:  2011-09-16       Impact factor: 11.598

6.  ERB1, the yeast homolog of mammalian Bop1, is an essential gene required for maturation of the 25S and 5.8S ribosomal RNAs.

Authors:  D G Pestov; M G Stockelman; Z Strezoska; L F Lau
Journal:  Nucleic Acids Res       Date:  2001-09-01       Impact factor: 16.971

7.  RRP20, a component of the 90S preribosome, is required for pre-18S rRNA processing in Saccharomyces cerevisiae.

Authors:  Saengchan Senapin; G Desmond Clark-Walker; Xin Jie Chen; Bertrand Séraphin; Marie-Claire Daugeron
Journal:  Nucleic Acids Res       Date:  2003-05-15       Impact factor: 16.971

8.  Ribosomal protein L35 is required for 27SB pre-rRNA processing in Saccharomyces cerevisiae.

Authors:  Reyes Babiano; Jesús de la Cruz
Journal:  Nucleic Acids Res       Date:  2010-04-14       Impact factor: 16.971

9.  Role of the yeast Rrp1 protein in the dynamics of pre-ribosome maturation.

Authors:  Edward W Horsey; Jelena Jakovljevic; Tiffany D Miles; Piyanun Harnpicharnchai; John L Woolford
Journal:  RNA       Date:  2004-05       Impact factor: 4.942

Review 10.  Ribosome biogenesis in the yeast Saccharomyces cerevisiae.

Authors:  John L Woolford; Susan J Baserga
Journal:  Genetics       Date:  2013-11       Impact factor: 4.562

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