Literature DB >> 18940671

Conversion of red fluorescent protein into a bright blue probe.

Oksana M Subach1, Illia S Gundorov, Masami Yoshimura, Fedor V Subach, Jinghang Zhang, David Grüenwald, Ekaterina A Souslova, Dmitriy M Chudakov, Vladislav V Verkhusha.   

Abstract

We used a red chromophore formation pathway, in which the anionic red chromophore is formed from the neutral blue intermediate, to suggest a rational design strategy to develop blue fluorescent proteins with a tyrosine-based chromophore. The strategy was applied to red fluorescent proteins of the different genetic backgrounds, such as TagRFP, mCherry, HcRed1, M355NA, and mKeima, which all were converted into blue probes. Further improvement of the blue variant of TagRFP by random mutagenesis resulted in an enhanced monomeric protein, mTagBFP, characterized by the substantially higher brightness, the faster chromophore maturation, and the higher pH stability than blue fluorescent proteins with a histidine in the chromophore. The detailed biochemical and photochemical analysis indicates that mTagBFP is the true monomeric protein tag for multicolor and lifetime imaging, as well as the outstanding donor for green fluorescent proteins in Förster resonance energy transfer applications.

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Year:  2008        PMID: 18940671      PMCID: PMC2585067          DOI: 10.1016/j.chembiol.2008.08.006

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  32 in total

1.  Förster distances between green fluorescent protein pairs.

Authors:  G H Patterson; D W Piston; B G Barisas
Journal:  Anal Biochem       Date:  2000-09-10       Impact factor: 3.365

2.  Blue fluorescent proteins with enhanced brightness and photostability from a structurally targeted library.

Authors:  Marco A Mena; Thomas P Treynor; Stephen L Mayo; Patrick S Daugherty
Journal:  Nat Biotechnol       Date:  2006-11-19       Impact factor: 54.908

3.  Three-chromophore FRET microscopy to analyze multiprotein interactions in living cells.

Authors:  Emilia Galperin; Vladislav V Verkhusha; Alexander Sorkin
Journal:  Nat Methods       Date:  2004-11-18       Impact factor: 28.547

Review 4.  Advances in fluorescent protein technology.

Authors:  Nathan C Shaner; George H Patterson; Michael W Davidson
Journal:  J Cell Sci       Date:  2007-12-15       Impact factor: 5.285

5.  Recent advances on in vivo imaging with fluorescent proteins.

Authors:  Robert M Hoffman
Journal:  Methods Cell Biol       Date:  2008       Impact factor: 1.441

6.  Improved green fluorescent protein by molecular evolution using DNA shuffling.

Authors:  A Crameri; E A Whitehorn; E Tate; W P Stemmer
Journal:  Nat Biotechnol       Date:  1996-03       Impact factor: 54.908

7.  Novel chromophores and buried charges control color in mFruits.

Authors:  Xiaokun Shu; Nathan C Shaner; Corinne A Yarbrough; Roger Y Tsien; S James Remington
Journal:  Biochemistry       Date:  2006-08-15       Impact factor: 3.162

8.  Refined crystal structure of DsRed, a red fluorescent protein from coral, at 2.0-A resolution.

Authors:  D Yarbrough; R M Wachter; K Kallio; M V Matz; S J Remington
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-16       Impact factor: 11.205

9.  Exploration of new chromophore structures leads to the identification of improved blue fluorescent proteins.

Authors:  Hui-wang Ai; Nathan C Shaner; Zihao Cheng; Roger Y Tsien; Robert E Campbell
Journal:  Biochemistry       Date:  2007-04-20       Impact factor: 3.162

10.  Fluorescent protein spectra.

Authors:  G Patterson; R N Day; D Piston
Journal:  J Cell Sci       Date:  2001-03       Impact factor: 5.285

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  123 in total

1.  A new bright green-emitting fluorescent protein--engineered monomeric and dimeric forms.

Authors:  Robielyn P Ilagan; Elizabeth Rhoades; David F Gruber; Hung-Teh Kao; Vincent A Pieribone; Lynne Regan
Journal:  FEBS J       Date:  2010-03-18       Impact factor: 5.542

2.  Dynamics of HIV-1 RNA Near the Plasma Membrane during Virus Assembly.

Authors:  Luca Sardo; Steven C Hatch; Jianbo Chen; Olga Nikolaitchik; Ryan C Burdick; De Chen; Christopher J Westlake; Stephen Lockett; Vinay K Pathak; Wei-Shau Hu
Journal:  J Virol       Date:  2015-08-19       Impact factor: 5.103

3.  Assessing the tendency of fluorescent proteins to oligomerize under physiologic conditions.

Authors:  Lindsey M Costantini; Matteo Fossati; Maura Francolini; Erik Lee Snapp
Journal:  Traffic       Date:  2012-02-20       Impact factor: 6.215

4.  Blue fluorescent dye-protein complexes based on fluorogenic cyanine dyes and single chain antibody fragments.

Authors:  Kimberly J Zanotti; Gloria L Silva; Yehuda Creeger; Kelly L Robertson; Alan S Waggoner; Peter B Berget; Bruce A Armitage
Journal:  Org Biomol Chem       Date:  2010-12-22       Impact factor: 3.876

Review 5.  Fluorescent proteins in cellular organelles: serious pitfalls and some solutions.

Authors:  Lindsey M Costantini; Erik Lee Snapp
Journal:  DNA Cell Biol       Date:  2013-08-24       Impact factor: 3.311

6.  Transgenically targeted rabies virus demonstrates a major monosynaptic projection from hippocampal area CA2 to medial entorhinal layer II neurons.

Authors:  David C Rowland; Aldis P Weible; Ian R Wickersham; Haiyan Wu; Mark Mayford; Menno P Witter; Clifford G Kentros
Journal:  J Neurosci       Date:  2013-09-11       Impact factor: 6.167

Review 7.  Chromophore chemistry of fluorescent proteins controlled by light.

Authors:  Daria M Shcherbakova; Vladislav V Verkhusha
Journal:  Curr Opin Chem Biol       Date:  2014-05-13       Impact factor: 8.822

8.  Domains of the Hepatitis B Virus Small Surface Protein S Mediating Oligomerization.

Authors:  Sascha Suffner; Nadine Gerstenberg; Maria Patra; Paula Ruibal; Ahmed Orabi; Michael Schindler; Volker Bruss
Journal:  J Virol       Date:  2018-05-14       Impact factor: 5.103

9.  Cysteineless non-glycosylated monomeric blue fluorescent protein, secBFP2, for studies in the eukaryotic secretory pathway.

Authors:  Lindsey M Costantini; Oksana M Subach; Matias Jaureguiberry-bravo; Vladislav V Verkhusha; Erik L Snapp
Journal:  Biochem Biophys Res Commun       Date:  2012-12-19       Impact factor: 3.575

Review 10.  The fluorescent protein palette: tools for cellular imaging.

Authors:  Richard N Day; Michael W Davidson
Journal:  Chem Soc Rev       Date:  2009-08-04       Impact factor: 54.564

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