Literature DB >> 21922057

A novel conformation of RNA polymerase sheds light on the mechanism of transcription.

Shunsuke Tagami1, Shun-Ichi Sekine, Shigeyuki Yokoyama.   

Abstract

Transcription is a complicated, multistep process requiring stringent control. Its accuracy may be achieved in part by the conformational changes of RNA polymerase (RNAP). Here, we discuss the functional relevance of the recently reported conformational changes of RNAP, which may affect transcription control, RNAP translocation and transcription termination.

Year:  2011        PMID： 21922057      PMCID： PMC3173682          DOI： 10.4161/trns.2.4.16148

Source DB:  PubMed          Journal:  Transcription        ISSN： 2154-1272


  30 in total

1.  Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

Authors:  G Zhang; E A Campbell; L Minakhin; C Richter; K Severinov; S A Darst
Journal:  Cell       Date:  1999-09-17       Impact factor: 41.582

2.  Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution.

Authors:  Dmitry G Vassylyev; Shun-ichi Sekine; Oleg Laptenko; Jookyung Lee; Marina N Vassylyeva; Sergei Borukhov; Shigeyuki Yokoyama
Journal:  Nature       Date:  2002-05-08       Impact factor: 49.962

Review 3.  Proteins shared by the transcription and translation machines.

Authors:  C L Squires; D Zaporojets
Journal:  Annu Rev Microbiol       Date:  2000       Impact factor: 15.500

4.  Swing-gate model of nucleotide entry into the RNA polymerase active center.

Authors:  Vitaliy Epshtein; Arkady Mustaev; Vadim Markovtsov; Oxana Bereshchenko; Vadim Nikiforov; Alex Goldfarb
Journal:  Mol Cell       Date:  2002-09       Impact factor: 17.970

5.  Biochemical assays of Gre factors of Thermus thermophilus.

Authors:  Oleg Laptenko; Sergei Borukhov
Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

Review 6.  Thinking quantitatively about transcriptional regulation.

Authors:  Sandra J Greive; Peter H von Hippel
Journal:  Nat Rev Mol Cell Biol       Date:  2005-03       Impact factor: 94.444

7.  Structural basis for transcription elongation by bacterial RNA polymerase.

Authors:  Dmitry G Vassylyev; Marina N Vassylyeva; Anna Perederina; Tahir H Tahirov; Irina Artsimovitch
Journal:  Nature       Date:  2007-06-20       Impact factor: 49.962

8.  Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA.

Authors:  Jasmin F Sydow; Florian Brueckner; Alan C M Cheung; Gerke E Damsma; Stefan Dengl; Elisabeth Lehmann; Dmitry Vassylyev; Patrick Cramer
Journal:  Mol Cell       Date:  2009-06-26       Impact factor: 17.970

9.  Regulation through the RNA polymerase secondary channel. Structural and functional variability of the coiled-coil transcription factors.

Authors:  Jindrich Symersky; Anna Perederina; Marina N Vassylyeva; Vladimir Svetlov; Irina Artsimovitch; Dmitry G Vassylyev
Journal:  J Biol Chem       Date:  2005-11-18       Impact factor: 5.157

10.  Terminators of transcription with RNA polymerase from Escherichia coli: what they look like and how to find them.

Authors:  V Brendel; G H Hamm; E N Trifonov
Journal:  J Biomol Struct Dyn       Date:  1986-02
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  7 in total

Review 1.  σ70 and PhoB activator: getting a better grip.

Authors:  Albert Canals; Alexandre G Blanco; Miquel Coll
Journal:  Transcription       Date:  2012-07-01

2.  The magic spot: a ppGpp binding site on E. coli RNA polymerase responsible for regulation of transcription initiation.

Authors:  Wilma Ross; Catherine E Vrentas; Patricia Sanchez-Vazquez; Tamas Gaal; Richard L Gourse
Journal:  Mol Cell       Date:  2013-04-25       Impact factor: 17.970

Review 3.  Basic mechanism of transcription by RNA polymerase II.

Authors:  Vladimir Svetlov; Evgeny Nudler
Journal:  Biochim Biophys Acta       Date:  2012-09-06

Review 4.  NusG-Spt5 proteins-Universal tools for transcription modification and communication.

Authors:  Sushil Kumar Tomar; Irina Artsimovitch
Journal:  Chem Rev       Date:  2013-05-02       Impact factor: 60.622

Review 5.  Recent functional insights into the role of (p)ppGpp in bacterial physiology.

Authors:  Vasili Hauryliuk; Gemma C Atkinson; Katsuhiko S Murakami; Tanel Tenson; Kenn Gerdes
Journal:  Nat Rev Microbiol       Date:  2015-04-08       Impact factor: 60.633

6.  E. coli TraR allosterically regulates transcription initiation by altering RNA polymerase conformation.

Authors:  James Chen; Saumya Gopalkrishnan; Courtney Chiu; Albert Y Chen; Elizabeth A Campbell; Richard L Gourse; Wilma Ross; Seth A Darst
Journal:  Elife       Date:  2019-12-16       Impact factor: 8.140

7.  Ratcheting of RNA polymerase toward structural principles of RNA polymerase operations.

Authors:  Shun-ichi Sekine; Yuko Murayama; Vladimir Svetlov; Evgeny Nudler; Shigeyuki Yokoyama
Journal:  Transcription       Date:  2015
  7 in total

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