Literature DB >> 15714199

Thinking quantitatively about transcriptional regulation.

Sandra J Greive1, Peter H von Hippel.   

Abstract

By thinking about the chemical and physical mechanisms that are involved in the stepwise elongation of RNA transcripts, we can begin to understand the way that these mechanisms are controlled within the cell to reflect the different requirements for transcription that are posed by various metabolic, developmental and disease states. Here, we focus on the mechanistic details of the single-nucleotide addition (or excision) cycle in the transcription process, as this is the level at which many regulatory mechanisms function and can be explained in quantitative terms.

Mesh:

Substances:

Year:  2005        PMID: 15714199     DOI: 10.1038/nrm1588

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  60 in total

1.  The Influence of Look-Ahead on the Error Rate of Transcription.

Authors:  Y R Yamada; C S Peskin
Journal:  Math Model Nat Phenom       Date:  2010-01-27       Impact factor: 4.157

2.  Importance of steric effects on the efficiency and fidelity of transcription by T7 RNA polymerase.

Authors:  Sébastien Ulrich; Eric T Kool
Journal:  Biochemistry       Date:  2011-11-01       Impact factor: 3.162

3.  A small post-translocation energy bias aids nucleotide selection in T7 RNA polymerase transcription.

Authors:  Jin Yu; George Oster
Journal:  Biophys J       Date:  2012-02-07       Impact factor: 4.033

4.  Transcription regulatory elements are punctuation marks for DNA replication.

Authors:  Ekaterina V Mirkin; Daniel Castro Roa; Evgeny Nudler; Sergei M Mirkin
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-02       Impact factor: 11.205

5.  Conformational heterogeneity in RNA polymerase observed by single-pair FRET microscopy.

Authors:  Oana Coban; Don C Lamb; Evgeny Zaychikov; Hermann Heumann; G Ulrich Nienhaus
Journal:  Biophys J       Date:  2006-03-31       Impact factor: 4.033

6.  Accessory proteins assist exonuclease-deficient bacteriophage T4 DNA polymerase in replicating past an abasic site.

Authors:  Giuseppina Blanca; Emmanuelle Delagoutte; Nicolas Tanguy le Gac; Neil P Johnson; Giuseppe Baldacci; Giuseppe Villani
Journal:  Biochem J       Date:  2007-03-01       Impact factor: 3.857

7.  pH-dependent conformational switch activates the inhibitor of transcription elongation.

Authors:  Oleg Laptenko; Seung-Sup Kim; Jookyung Lee; Marina Starodubtseva; Fellipe Cava; Jose Berenguer; Xiang-Peng Kong; Sergei Borukhov
Journal:  EMBO J       Date:  2006-04-20       Impact factor: 11.598

8.  Genome-wide analysis reveals regulatory role of G4 DNA in gene transcription.

Authors:  Zhuo Du; Yiqiang Zhao; Ning Li
Journal:  Genome Res       Date:  2007-12-20       Impact factor: 9.043

9.  Thermodynamic and kinetic modeling of transcriptional pausing.

Authors:  Vasisht R Tadigotla; Dáibhid O Maoiléidigh; Anirvan M Sengupta; Vitaly Epshtein; Richard H Ebright; Evgeny Nudler; Andrei E Ruckenstein
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-13       Impact factor: 11.205

10.  RNA polymerase: a nexus of gene regulation.

Authors:  John D Helmann
Journal:  Methods       Date:  2009-01       Impact factor: 3.608

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.