Literature DB >> 25853779

Recent functional insights into the role of (p)ppGpp in bacterial physiology.

Vasili Hauryliuk1, Gemma C Atkinson1, Katsuhiko S Murakami2, Tanel Tenson3, Kenn Gerdes4.   

Abstract

The alarmones guanosine tetraphosphate and guanosine pentaphosphate (collectively referred to as (p)ppGpp) are involved in regulating growth and several different stress responses in bacteria. In recent years, substantial progress has been made in our understanding of the molecular mechanisms of (p)ppGpp metabolism and (p)ppGpp-mediated regulation. In this Review, we summarize these recent insights, with a focus on the molecular mechanisms governing the activity of the RelA/SpoT homologue (RSH) proteins, which are key players that regulate the cellular levels of (p)ppGpp. We also discuss the structural basis of transcriptional regulation by (p)ppGpp and the role of (p)ppGpp in GTP metabolism and in the emergence of bacterial persisters.

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Year:  2015        PMID: 25853779      PMCID: PMC4659695          DOI: 10.1038/nrmicro3448

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  124 in total

1.  Bacterial persistence as a phenotypic switch.

Authors:  Nathalie Q Balaban; Jack Merrin; Remy Chait; Lukasz Kowalik; Stanislas Leibler
Journal:  Science       Date:  2004-08-12       Impact factor: 47.728

2.  DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP.

Authors:  Brian J Paul; Melanie M Barker; Wilma Ross; David A Schneider; Cathy Webb; John W Foster; Richard L Gourse
Journal:  Cell       Date:  2004-08-06       Impact factor: 41.582

Review 3.  ppGpp: magic beyond RNA polymerase.

Authors:  Zachary D Dalebroux; Michele S Swanson
Journal:  Nat Rev Microbiol       Date:  2012-02-16       Impact factor: 60.633

Review 4.  Regulation of secondary metabolism in streptomycetes.

Authors:  Mervyn J Bibb
Journal:  Curr Opin Microbiol       Date:  2005-04       Impact factor: 7.934

Review 5.  (p)ppGpp: still magical?

Authors:  Katarzyna Potrykus; Michael Cashel
Journal:  Annu Rev Microbiol       Date:  2008       Impact factor: 15.500

6.  The guanosine nucleotide (p)ppGpp initiates development and A-factor production in myxococcus xanthus.

Authors:  B Z Harris; D Kaiser; M Singer
Journal:  Genes Dev       Date:  1998-04-01       Impact factor: 11.361

7.  ppGpp is the major source of growth rate control in E. coli.

Authors:  Katarzyna Potrykus; Helen Murphy; Nadège Philippe; Michael Cashel
Journal:  Environ Microbiol       Date:  2010-10-15       Impact factor: 5.491

8.  Guanosine pentaphosphate phosphohydrolase of Escherichia coli is a long-chain exopolyphosphatase.

Authors:  J D Keasling; L Bertsch; A Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  1993-08-01       Impact factor: 11.205

9.  Degradation of ppGpp by nudix pyrophosphatase modulates the transition of growth phase in the bacterium Thermus thermophilus.

Authors:  Takushi Ooga; Yoshiaki Ohashi; Seiki Kuramitsu; Yoshinori Koyama; Masaru Tomita; Tomoyoshi Soga; Ryoji Masui
Journal:  J Biol Chem       Date:  2009-04-03       Impact factor: 5.157

10.  The RelA/SpoT homolog (RSH) superfamily: distribution and functional evolution of ppGpp synthetases and hydrolases across the tree of life.

Authors:  Gemma C Atkinson; Tanel Tenson; Vasili Hauryliuk
Journal:  PLoS One       Date:  2011-08-09       Impact factor: 3.240

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  280 in total

1.  REP sequences: Mediators of the environmental stress response?

Authors:  Wenxing Liang; Murray P Deutscher
Journal:  RNA Biol       Date:  2015-11-17       Impact factor: 4.652

2.  High coverage metabolomics analysis reveals phage-specific alterations to Pseudomonas aeruginosa physiology during infection.

Authors:  Jeroen De Smet; Michael Zimmermann; Maria Kogadeeva; Pieter-Jan Ceyssens; Wesley Vermaelen; Bob Blasdel; Ho Bin Jang; Uwe Sauer; Rob Lavigne
Journal:  ISME J       Date:  2016-02-16       Impact factor: 10.302

Review 3.  (p)ppGpp and Its Role in Bacterial Persistence: New Challenges.

Authors:  Olga Pacios; Lucia Blasco; Inés Bleriot; Laura Fernandez-Garcia; Antón Ambroa; María López; German Bou; Rafael Cantón; Rodolfo Garcia-Contreras; Thomas K Wood; Maria Tomás
Journal:  Antimicrob Agents Chemother       Date:  2020-09-21       Impact factor: 5.191

4.  A revised mechanism for (p)ppGpp synthesis by Rel proteins: The critical role of the 2'-OH of GTP.

Authors:  Pratik Rajendra Patil; Neha Vithani; Virender Singh; Ashok Kumar; Balaji Prakash
Journal:  J Biol Chem       Date:  2020-07-21       Impact factor: 5.157

5.  The Rel stringent factor from Thermus thermophilus: crystallization and X-ray analysis.

Authors:  Katleen Van Nerom; Hedvig Tamman; Hiraku Takada; Vasili Hauryliuk; Abel Garcia-Pino
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2019-08-02       Impact factor: 1.056

6.  Escherichia coli translation strategies differ across carbon, nitrogen and phosphorus limitation conditions.

Authors:  Sophia Hsin-Jung Li; Zhiyuan Li; Junyoung O Park; Christopher G King; Joshua D Rabinowitz; Ned S Wingreen; Zemer Gitai
Journal:  Nat Microbiol       Date:  2018-07-23       Impact factor: 17.745

7.  Alarmones as Vestiges of a Bygone RNA World.

Authors:  Ricardo Hernández-Morales; Arturo Becerra; Antonio Lazcano
Journal:  J Mol Evol       Date:  2019-01-02       Impact factor: 2.395

Review 8.  Tracking the homeostasis of second messenger cyclic-di-GMP in bacteria.

Authors:  Anushya Petchiappan; Sujay Y Naik; Dipankar Chatterji
Journal:  Biophys Rev       Date:  2020-02-15

9.  Genome-Wide Investigation of Biofilm Formation in Bacillus cereus.

Authors:  Fang Yan; Yiyang Yu; Kevin Gozzi; Yun Chen; Jian-Hua Guo; Yunrong Chai
Journal:  Appl Environ Microbiol       Date:  2017-06-16       Impact factor: 4.792

10.  Paper-based fluorogenic RNA aptamer sensors for label-free detection of small molecules.

Authors:  Fatemeh Shafiei; Kathleen McAuliffe; Yousef Bagheri; Zhining Sun; Qikun Yu; Rigumula Wu; Mingxu You
Journal:  Anal Methods       Date:  2020-06-04       Impact factor: 2.896

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