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Literature DB >> 21914872

Complete genome sequence of Leuconostoc kimchii strain C2, isolated from Kimchi.

Seung Hyeon Lee¹, Ji Young Jung, Se Hee Lee, Che Ok Jeon.

Abstract

Leuconostoc kimchii strain C2 was isolated from fermented kimchi in Korea. Here we announce the complete genome sequence of Leuconostoc kimchii strain C2, consisting of a 1,877,174-bp chromosome with a G+C content of 37.9% and no plasmid and describe major findings from its annotation.

Entities: Species

Mesh：

Year: 2011 PMID： 21914872 PMCID： PMC3187422 DOI： 10.1128/JB.05707-11

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

8 in total

1. Leuconostoc inhae sp. nov., a lactic acid bacterium isolated from kimchi.

Authors: Bongjoon Kim; Jongho Lee; Jichan Jang; Jeongho Kim; Hongui Han
Journal: Int J Syst Evol Microbiol Date: 2003-07 Impact factor: 2.747

2. Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors: B Ewing; L Hillier; M C Wendl; P Green
Journal: Genome Res Date: 1998-03 Impact factor: 9.043

3. Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors: B Ewing; P Green
Journal: Genome Res Date: 1998-03 Impact factor: 9.043

4. Consed: a graphical tool for sequence finishing.

Authors: D Gordon; C Abajian; P Green
Journal: Genome Res Date: 1998-03 Impact factor: 9.043

5. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors: T M Lowe; S R Eddy
Journal: Nucleic Acids Res Date: 1997-03-01 Impact factor: 16.971

Review 6. Biochemical, microbiological, and nutritional aspects of kimchi (Korean fermented vegetable products).

Authors: H S Cheigh; K Y Park
Journal: Crit Rev Food Sci Nutr Date: 1994 Impact factor: 11.176

7. Metagenomic analysis of kimchi, a traditional Korean fermented food.

Authors: Ji Young Jung; Se Hee Lee; Jeong Myeong Kim; Moon Su Park; Jin-Woo Bae; Yoonsoo Hahn; Eugene L Madsen; Che Ok Jeon
Journal: Appl Environ Microbiol Date: 2011-02-11 Impact factor: 4.792

8. RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors: Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal: Nucleic Acids Res Date: 2007-04-22 Impact factor: 16.971

8 in total

5 in total

Complete genome sequence of Leuconostoc kimchii strain C2, isolated from Kimchi.

1. Leuconostoc inhae sp. nov., a lactic acid bacterium isolated from kimchi.

2. Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

3. Base-calling of automated sequencer traces using phred. II. Error probabilities.

4. Consed: a graphical tool for sequence finishing.

5. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Review 6. Biochemical, microbiological, and nutritional aspects of kimchi (Korean fermented vegetable products).

7. Metagenomic analysis of kimchi, a traditional Korean fermented food.

8. RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

1. Genome sequence analysis of potential probiotic strain Leuconostoc lactis EFEL005 isolated from kimchi.

2. Complete genome sequence of Leuconostoc mesenteroides subsp. mesenteroides strain J18, isolated from kimchi.

3. Complete genome sequence of Leuconostoc gelidum strain JB7, isolated from kimchi.

4. Complete genome sequence of Leuconostoc carnosum strain JB16, isolated from kimchi.

5. ODFM, an omics data resource from microorganisms associated with fermented foods.