Literature DB >> 21903630

survcomp: an R/Bioconductor package for performance assessment and comparison of survival models.

Markus S Schröder1, Aedín C Culhane, John Quackenbush, Benjamin Haibe-Kains.   

Abstract

SUMMARY: The survcomp package provides functions to assess and statistically compare the performance of survival/risk prediction models. It implements state-of-the-art statistics to (i) measure the performance of risk prediction models; (ii) combine these statistical estimates from multiple datasets using a meta-analytical framework; and (iii) statistically compare the performance of competitive models.

Mesh：

Year:  2011        PMID： 21903630      PMCID： PMC3208391          DOI： 10.1093/bioinformatics/btr511

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  15 in total

1.  Assessment and comparison of prognostic classification schemes for survival data.

Authors:  E Graf; C Schmoor; W Sauerbrei; M Schumacher
Journal:  Stat Med       Date:  1999 Sep 15-30       Impact factor: 2.373

2.  Time-dependent ROC curves for censored survival data and a diagnostic marker.

Authors:  P J Heagerty; T Lumley; M S Pepe
Journal:  Biometrics       Date:  2000-06       Impact factor: 2.571

3.  The Nottingham Prognostic Index in primary breast cancer.

Authors:  M H Galea; R W Blamey; C E Elston; I O Ellis
Journal:  Breast Cancer Res Treat       Date:  1992       Impact factor: 4.872

4.  A new measure of prognostic separation in survival data.

Authors:  Patrick Royston; Willi Sauerbrei
Journal:  Stat Med       Date:  2004-03-15       Impact factor: 2.373

5.  Parallelized prediction error estimation for evaluation of high-dimensional models.

Authors:  Christine Porzelius; Harald Binder; Martin Schumacher
Journal:  Bioinformatics       Date:  2009-01-28       Impact factor: 6.937

Review 6.  Multivariable prognostic models: issues in developing models, evaluating assumptions and adequacy, and measuring and reducing errors.

Authors:  F E Harrell; K L Lee; D B Mark
Journal:  Stat Med       Date:  1996-02-28       Impact factor: 2.373

7.  On the C-statistics for evaluating overall adequacy of risk prediction procedures with censored survival data.

Authors:  Hajime Uno; Tianxi Cai; Michael J Pencina; Ralph B D'Agostino; L J Wei
Journal:  Stat Med       Date:  2011-01-13       Impact factor: 2.373

8.  Cross-validation in survival analysis.

Authors:  P J Verweij; H C Van Houwelingen
Journal:  Stat Med       Date:  1993-12-30       Impact factor: 2.373

9.  Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis.

Authors:  Christos Sotiriou; Pratyaksha Wirapati; Sherene Loi; Adrian Harris; Steve Fox; Johanna Smeds; Hans Nordgren; Pierre Farmer; Viviane Praz; Benjamin Haibe-Kains; Christine Desmedt; Denis Larsimont; Fatima Cardoso; Hans Peterse; Dimitry Nuyten; Marc Buyse; Marc J Van de Vijver; Jonas Bergh; Martine Piccart; Mauro Delorenzi
Journal:  J Natl Cancer Inst       Date:  2006-02-15       Impact factor: 13.506

10.  A comparative study of survival models for breast cancer prognostication based on microarray data: does a single gene beat them all?

Authors:  B Haibe-Kains; C Desmedt; C Sotiriou; G Bontempi
Journal:  Bioinformatics       Date:  2008-07-17       Impact factor: 6.937
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  166 in total

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Journal:  Sci Transl Med       Date:  2013-09-11       Impact factor: 17.956

3.  Whole Genome Sequencing Identifies CRISPLD2 as a Lung Function Gene in Children With Asthma.

Authors:  Priyadarshini Kachroo; Julian Hecker; Bo L Chawes; Tarunveer S Ahluwalia; Michael H Cho; Dandi Qiao; Rachel S Kelly; Su H Chu; Yamini V Virkud; Mengna Huang; Kathleen C Barnes; Esteban G Burchard; Celeste Eng; Donglei Hu; Juan C Celedón; Michelle Daya; Albert M Levin; Hongsheng Gui; L Keoki Williams; Erick Forno; Angel C Y Mak; Lydiana Avila; Manuel E Soto-Quiros; Michelle M Cloutier; Edna Acosta-Pérez; Glorisa Canino; Klaus Bønnelykke; Hans Bisgaard; Benjamin A Raby; Christoph Lange; Scott T Weiss; Jessica A Lasky-Su
Journal:  Chest       Date:  2019-09-23       Impact factor: 9.410

4.  Development and validation of an immune-related gene pairs signature in colorectal cancer.

Authors:  Jianping Wu; Ying Zhao; Juanwen Zhang; Qianxia Wu; Weilin Wang
Journal:  Oncoimmunology       Date:  2019-04-15       Impact factor: 8.110

5.  RamiGO: an R/Bioconductor package providing an AmiGO visualize interface.

Authors:  Markus S Schröder; Daniel Gusenleitner; John Quackenbush; Aedín C Culhane; Benjamin Haibe-Kains
Journal:  Bioinformatics       Date:  2013-01-06       Impact factor: 6.937

6.  A three-gene model to robustly identify breast cancer molecular subtypes.

Authors:  Benjamin Haibe-Kains; Christine Desmedt; Sherene Loi; Aedin C Culhane; Gianluca Bontempi; John Quackenbush; Christos Sotiriou
Journal:  J Natl Cancer Inst       Date:  2012-01-18       Impact factor: 13.506

7.  PRMT2 and RORγ expression are associated with breast cancer survival outcomes.

Authors:  Tae Gyu Oh; Peter Bailey; Eloise Dray; Aaron G Smith; Joel Goode; Natalie Eriksson; John W Funder; Peter J Fuller; Evan R Simpson; Wayne D Tilley; Peter J Leedman; Christine L Clarke; Sean Grimmond; Dennis H Dowhan; George E O Muscat
Journal:  Mol Endocrinol       Date:  2014-06-09

8.  Multigene signature for predicting prognosis of patients with 1p19q co-deletion diffuse glioma.

Authors:  Xin Hu; Emmanuel Martinez-Ledesma; Siyuan Zheng; Hoon Kim; Floris Barthel; Tao Jiang; Kenneth R Hess; Roel G W Verhaak
Journal:  Neuro Oncol       Date:  2017-06-01       Impact factor: 12.300

9.  Somatic Mutations Drive Distinct Imaging Phenotypes in Lung Cancer.

Authors:  Emmanuel Rios Velazquez; Chintan Parmar; Ying Liu; Thibaud P Coroller; Gisele Cruz; Olya Stringfield; Zhaoxiang Ye; Mike Makrigiorgos; Fiona Fennessy; Raymond H Mak; Robert Gillies; John Quackenbush; Hugo J W L Aerts
Journal:  Cancer Res       Date:  2017-05-31       Impact factor: 12.701

10.  Validation of the 12-gene Predictive Signature for Adjuvant Chemotherapy Response in Lung Cancer.

Authors:  Yang Xie; Wei Lu; Shidan Wang; Ximing Tang; Hao Tang; Yunyun Zhou; Cesar Moran; Carmen Behrens; Jack A Roth; Qinghua Zhou; David H Johnson; Stephen G Swisher; John V Heymach; Vassiliki A Papadimitrakopoulou; Guanghua Xiao; John D Minna; Ignacio I Wistuba
Journal:  Clin Cancer Res       Date:  2018-10-04       Impact factor: 12.531
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