Literature DB >> 21900275

Multiple adaptive substitutions during evolution in novel environments.

Kavita Jain1, Sarada Seetharaman.   

Abstract

We consider an asexual population under strong selection-weak mutation conditions evolving on rugged fitness landscapes with many local fitness peaks. Unlike the previous studies in which the initial fitness of the population is assumed to be high, here we start the adaptation process with a low fitness corresponding to a population in a stressful novel environment. For generic fitness distributions, using an analytic argument we find that the average number of steps to a local optimum varies logarithmically with the genotype sequence length and increases as the correlations among genotypic fitnesses increase. When the fitnesses are exponentially or uniformly distributed, using an evolution equation for the distribution of population fitness, we analytically calculate the fitness distribution of fixed beneficial mutations and the walk length distribution.

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Year:  2011        PMID: 21900275      PMCID: PMC3213369          DOI: 10.1534/genetics.111.134163

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  25 in total

1.  Fitness effects of advantageous mutations in evolving Escherichia coli populations.

Authors:  M Imhof; C Schlotterer
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  Fitness effects of fixed beneficial mutations in microbial populations.

Authors:  Daniel E Rozen; J Arjan G M de Visser; Philip J Gerrish
Journal:  Curr Biol       Date:  2002-06-25       Impact factor: 10.834

3.  Adaptive walks and extreme value theory.

Authors:  Johannes Neidhart; Joachim Krug
Journal:  Phys Rev Lett       Date:  2011-10-19       Impact factor: 9.161

4.  The distribution of fitness effects of new beneficial mutations in Pseudomonas fluorescens.

Authors:  Michael J McDonald; Tim F Cooper; Hubertus J E Beaumont; Paul B Rainey
Journal:  Biol Lett       Date:  2010-07-21       Impact factor: 3.703

5.  Mutational effects and population dynamics during viral adaptation challenge current models.

Authors:  Craig R Miller; Paul Joyce; Holly A Wichman
Journal:  Genetics       Date:  2010-11-01       Impact factor: 4.562

6.  The population genetics of adaptation on correlated fitness landscapes: the block model.

Authors:  H Allen Orr
Journal:  Evolution       Date:  2006-06       Impact factor: 3.694

7.  Distribution of fitness effects among beneficial mutations before selection in experimental populations of bacteria.

Authors:  Rees Kassen; Thomas Bataillon
Journal:  Nat Genet       Date:  2006-03-19       Impact factor: 38.330

Review 8.  Colloquium papers: Adaptive landscapes and protein evolution.

Authors:  Maurício Carneiro; Daniel L Hartl
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-30       Impact factor: 11.205

9.  Local properties of Kauffman's N-k model: A tunably rugged energy landscape.

Authors: 
Journal:  Phys Rev A       Date:  1991-11-15       Impact factor: 3.140

10.  The properties of adaptive walks in evolving populations of fungus.

Authors:  Sijmen E Schoustra; Thomas Bataillon; Danna R Gifford; Rees Kassen
Journal:  PLoS Biol       Date:  2009-11-24       Impact factor: 8.029

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  8 in total

1.  Multiplicative fitness, rapid haplotype discovery, and fitness decay explain evolution of human MHC.

Authors:  Alexander E Lobkovsky; Lee Levi; Yuri I Wolf; Martin Maiers; Loren Gragert; Idan Alter; Yoram Louzoun; Eugene V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  2019-06-21       Impact factor: 11.205

2.  Accelerated simulation of evolutionary trajectories in origin-fixation models.

Authors:  Ashley I Teufel; Claus O Wilke
Journal:  J R Soc Interface       Date:  2017-02       Impact factor: 4.118

3.  Long-term evolution on complex fitness landscapes when mutation is weak.

Authors:  David M McCandlish
Journal:  Heredity (Edinb)       Date:  2018-09-19       Impact factor: 3.821

4.  Adaptation in tunably rugged fitness landscapes: the rough Mount Fuji model.

Authors:  Johannes Neidhart; Ivan G Szendro; Joachim Krug
Journal:  Genetics       Date:  2014-08-13       Impact factor: 4.562

5.  The fitness landscape of the codon space across environments.

Authors:  Inês Fragata; Sebastian Matuszewski; Mark A Schmitz; Thomas Bataillon; Jeffrey D Jensen; Claudia Bank
Journal:  Heredity (Edinb)       Date:  2018-08-20       Impact factor: 3.821

6.  Quantifying the adaptive potential of an antibiotic resistance enzyme.

Authors:  Martijn F Schenk; Ivan G Szendro; Joachim Krug; J Arjan G M de Visser
Journal:  PLoS Genet       Date:  2012-06-28       Impact factor: 5.917

Review 7.  Synthetic biology for the directed evolution of protein biocatalysts: navigating sequence space intelligently.

Authors:  Andrew Currin; Neil Swainston; Philip J Day; Douglas B Kell
Journal:  Chem Soc Rev       Date:  2015-03-07       Impact factor: 54.564

8.  Exploiting the Adaptation Dynamics to Predict the Distribution of Beneficial Fitness Effects.

Authors:  Sona John; Sarada Seetharaman
Journal:  PLoS One       Date:  2016-03-18       Impact factor: 3.240

  8 in total

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