Literature DB >> 21893173

RNA polymerase I activity is regulated at multiple steps in the transcription cycle: recent insights into factors that influence transcription elongation.

David Alan Schneider1.   

Abstract

Synthesis of the translation apparatus is a central activity in growing and/or proliferating cells. Because of its fundamental importance and direct connection to cell proliferation, ribosome synthesis has been a focus of ongoing research for several decades. As a consequence, much is known about the essential factors involved in this process. Many studies have shown that transcription of the ribosomal DNA by RNA polymerase I is a major target for cellular regulation of ribosome synthesis rates. The initiation of transcription by RNA polymerase I has been implicated as a regulatory target, however, recent studies suggest that the elongation step in transcription is also influenced and regulated by trans-acting factors. This review describes the factors required for rRNA synthesis and focuses on recent works that have begun to identify and characterize factors that influence transcription elongation by RNA polymerase I and its regulation.
Copyright © 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 21893173      PMCID: PMC3234310          DOI: 10.1016/j.gene.2011.08.006

Source DB:  PubMed          Journal:  Gene        ISSN: 0378-1119            Impact factor:   3.688


  110 in total

1.  Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

Authors:  G Zhang; E A Campbell; L Minakhin; C Richter; K Severinov; S A Darst
Journal:  Cell       Date:  1999-09-17       Impact factor: 41.582

2.  Reduction in ribosomal protein synthesis is sufficient to explain major effects on ribosome production after short-term TOR inactivation in Saccharomyces cerevisiae.

Authors:  Alarich Reiter; Robert Steinbauer; Anja Philippi; Jochen Gerber; Herbert Tschochner; Philipp Milkereit; Joachim Griesenbeck
Journal:  Mol Cell Biol       Date:  2010-12-13       Impact factor: 4.272

3.  RNA polymerase I contains a TFIIF-related DNA-binding subcomplex.

Authors:  Sebastian R Geiger; Kristina Lorenzen; Amelie Schreieck; Patrizia Hanecker; Dirk Kostrewa; Albert J R Heck; Patrick Cramer
Journal:  Mol Cell       Date:  2010-08-27       Impact factor: 17.970

4.  RNA polymerase II elongation factors Spt4p and Spt5p play roles in transcription elongation by RNA polymerase I and rRNA processing.

Authors:  D A Schneider; S L French; Y N Osheim; A O Bailey; L Vu; J Dodd; J R Yates; A L Beyer; M Nomura
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-14       Impact factor: 11.205

5.  A genome-scale RNAi screen for Oct4 modulators defines a role of the Paf1 complex for embryonic stem cell identity.

Authors:  Li Ding; Maciej Paszkowski-Rogacz; Anja Nitzsche; Mikolaj Michal Slabicki; Anne-Kristin Heninger; Ingrid de Vries; Ralf Kittler; Magno Junqueira; Andrej Shevchenko; Herbert Schulz; Norbert Hubner; Michael Xavier Doss; Agapios Sachinidis; Juergen Hescheler; Roberto Iacone; Konstantinos Anastassiadis; A Francis Stewart; M Teresa Pisabarro; Antonio Caldarelli; Ina Poser; Mirko Theis; Frank Buchholz
Journal:  Cell Stem Cell       Date:  2009-04-02       Impact factor: 24.633

6.  Histones are required for transcription of yeast rRNA genes by RNA polymerase I.

Authors:  Prasad Tongaonkar; Sarah L French; Melanie L Oakes; Loan Vu; David A Schneider; Ann L Beyer; Masayasu Nomura
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-07       Impact factor: 11.205

7.  RNA polymerase I transcription factor Rrn3 is functionally conserved between yeast and human.

Authors:  B Moorefield; E A Greene; R H Reeder
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-25       Impact factor: 11.205

8.  Nucleolar transcription factor hUBF contains a DNA-binding motif with homology to HMG proteins.

Authors:  H M Jantzen; A Admon; S P Bell; R Tjian
Journal:  Nature       Date:  1990-04-26       Impact factor: 49.962

9.  Silencing in yeast rDNA chromatin: reciprocal relationship in gene expression between RNA polymerase I and II.

Authors:  Francesco Cioci; Loan Vu; Kristilyn Eliason; Melanie Oakes; Imran N Siddiqi; Masayasu Nomura
Journal:  Mol Cell       Date:  2003-07       Impact factor: 17.970

10.  Disruption of the nucleolus mediates stabilization of p53 in response to DNA damage and other stresses.

Authors:  Carlos P Rubbi; Jo Milner
Journal:  EMBO J       Date:  2003-11-17       Impact factor: 11.598

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  43 in total

1.  Targeting RNA-Polymerase I in Both Chemosensitive and Chemoresistant Populations in Epithelial Ovarian Cancer.

Authors:  Robert Cornelison; Zachary C Dobbin; Ashwini A Katre; Dae Hoon Jeong; Yinfeng Zhang; Dongquan Chen; Yuliya Petrova; Danielle C Llaneza; Adam D Steg; Laura Parsons; David A Schneider; Charles N Landen
Journal:  Clin Cancer Res       Date:  2017-08-04       Impact factor: 12.531

Review 2.  Ribosome Biogenesis in Plants: From Functional 45S Ribosomal DNA Organization to Ribosome Assembly Factors.

Authors:  Julio Sáez-Vásquez; Michel Delseny
Journal:  Plant Cell       Date:  2019-06-25       Impact factor: 11.277

3.  Proteins and RNA sequences required for the transition of the t-Utp complex into the SSU processome.

Authors:  Jennifer E G Gallagher
Journal:  FEMS Yeast Res       Date:  2019-01-01       Impact factor: 2.796

4.  Old drug, new target: ellipticines selectively inhibit RNA polymerase I transcription.

Authors:  William J Andrews; Tatiana Panova; Christophe Normand; Olivier Gadal; Irina G Tikhonova; Konstantin I Panov
Journal:  J Biol Chem       Date:  2013-01-04       Impact factor: 5.157

Review 5.  Eukaryotic transcription initiation machinery visualized at molecular level.

Authors:  Yan Han; Yuan He
Journal:  Transcription       Date:  2016-10-19

6.  SUMOylation down-regulates rDNA transcription by repressing expression of upstream-binding factor and proto-oncogene c-Myc.

Authors:  Yu Peng; Zhenxing Wang; Zhiqiang Wang; Fang Yu; Jiwen Li; Jiemin Wong
Journal:  J Biol Chem       Date:  2019-11-06       Impact factor: 5.157

7.  Spt6 Is Essential for rRNA Synthesis by RNA Polymerase I.

Authors:  Krysta L Engel; Sarah L French; Olga V Viktorovskaya; Ann L Beyer; David A Schneider
Journal:  Mol Cell Biol       Date:  2015-04-27       Impact factor: 4.272

8.  A conserved deubiquitinating enzyme controls cell growth by regulating RNA polymerase I stability.

Authors:  Lauren A Richardson; Benjamin J Reed; J Michael Charette; Emily F Freed; Eric K Fredrickson; Melissa N Locke; Susan J Baserga; Richard G Gardner
Journal:  Cell Rep       Date:  2012-08-16       Impact factor: 9.423

Review 9.  Dysregulation of the basal RNA polymerase transcription apparatus in cancer.

Authors:  Megan J Bywater; Richard B Pearson; Grant A McArthur; Ross D Hannan
Journal:  Nat Rev Cancer       Date:  2013-05       Impact factor: 60.716

Review 10.  TFIIB-related factors in RNA polymerase I transcription.

Authors:  Bruce A Knutson; Steven Hahn
Journal:  Biochim Biophys Acta       Date:  2012-08-30
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