Literature DB >> 22960599

TFIIB-related factors in RNA polymerase I transcription.

Bruce A Knutson1, Steven Hahn.   

Abstract

Eukaryotic RNA polymerases (Pol) I, II, III and archaeal Pol use a related set of general transcription factors to recognize promoter sequences and recruit Pol to promoters and to function at key points in the transcription initiation mechanism. The TFIIB-like general transcription factors (GTFs) function during several important and conserved steps in the initiation pathway for Pols II, III, and archaeal Pol. Until recently, the mechanism of Pol I initiation seemed unique, since it appeared to lack a GTF paralogous to the TFIIB-like proteins. The surprising recent discovery of TFIIB-related Pol I general factors in yeast and humans highlights the evolutionary conservation of transcription initiation mechanisms for all eukaryotic and archaeal Pols. These findings reveal new roles for the function of the Pol I GTFs and insight into the function of TFIIB-related factors. Models for Pol I transcription initiation are reexamined in light of these recent findings. This article is part of a Special Issue entitled: Transcription by Odd Pols.
Copyright © 2012 Elsevier B.V. All rights reserved.

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Year:  2012        PMID: 22960599      PMCID: PMC3556359          DOI: 10.1016/j.bbagrm.2012.08.003

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  111 in total

1.  RNA polymerase I contains a TFIIF-related DNA-binding subcomplex.

Authors:  Sebastian R Geiger; Kristina Lorenzen; Amelie Schreieck; Patrizia Hanecker; Dirk Kostrewa; Albert J R Heck; Patrick Cramer
Journal:  Mol Cell       Date:  2010-08-27       Impact factor: 17.970

Review 2.  Determinants of transcription initiation by archaeal RNA polymerase.

Authors:  Michael S Bartlett
Journal:  Curr Opin Microbiol       Date:  2005-10-24       Impact factor: 7.934

3.  The increase in the number of subunits in eukaryotic RNA polymerase III relative to RNA polymerase II is due to the permanent recruitment of general transcription factors.

Authors:  Robert Carter; Guy Drouin
Journal:  Mol Biol Evol       Date:  2009-12-21       Impact factor: 16.240

4.  TAF1B is a TFIIB-like component of the basal transcription machinery for RNA polymerase I.

Authors:  Srivatsava Naidu; J Karsten Friedrich; Jackie Russell; Joost C B M Zomerdijk
Journal:  Science       Date:  2011-09-16       Impact factor: 47.728

5.  Architecture of the yeast RNA polymerase II open complex and regulation of activity by TFIIF.

Authors:  James Fishburn; Steven Hahn
Journal:  Mol Cell Biol       Date:  2011-10-24       Impact factor: 4.272

6.  Structure of an RNA polymerase II-TFIIB complex and the transcription initiation mechanism.

Authors:  Xin Liu; David A Bushnell; Dong Wang; Guillermo Calero; Roger D Kornberg
Journal:  Science       Date:  2009-11-12       Impact factor: 47.728

7.  Nucleolar transcription factor hUBF contains a DNA-binding motif with homology to HMG proteins.

Authors:  H M Jantzen; A Admon; S P Bell; R Tjian
Journal:  Nature       Date:  1990-04-26       Impact factor: 49.962

8.  Multiprotein transcription factor UAF interacts with the upstream element of the yeast RNA polymerase I promoter and forms a stable preinitiation complex.

Authors:  D A Keys; B S Lee; J A Dodd; T T Nguyen; L Vu; E Fantino; L M Burson; Y Nogi; M Nomura
Journal:  Genes Dev       Date:  1996-04-01       Impact factor: 11.361

9.  PCF4 encodes an RNA polymerase III transcription factor with homology to TFIIB.

Authors:  A López-De-León; M Librizzi; K Puglia; I M Willis
Journal:  Cell       Date:  1992-10-16       Impact factor: 41.582

10.  Architecture of the RNA polymerase II preinitiation complex and mechanism of ATP-dependent promoter opening.

Authors:  Sebastian Grünberg; Linda Warfield; Steven Hahn
Journal:  Nat Struct Mol Biol       Date:  2012-07-01       Impact factor: 15.369

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  15 in total

Review 1.  Structural insights into transcription initiation by RNA polymerase II.

Authors:  Sebastian Grünberg; Steven Hahn
Journal:  Trends Biochem Sci       Date:  2013-10-11       Impact factor: 13.807

2.  RNA polymerase III accurately initiates transcription from RNA polymerase II promoters in vitro.

Authors:  Sascha H C Duttke
Journal:  J Biol Chem       Date:  2014-06-10       Impact factor: 5.157

3.  Identification of Conidiogenesis-Associated Genes in Colletotrichum gloeosporioides by Agrobacterium tumefaciens-Mediated Transformation.

Authors:  Jianyuan Wu; Zhirui Ji; Na Wang; Fumei Chi; Chengnan Xu; Zongshan Zhou; Junxiang Zhang
Journal:  Curr Microbiol       Date:  2016-09-01       Impact factor: 2.188

4.  Mutations on the DNA binding surface of TBP discriminate between yeast TATA and TATA-less gene transcription.

Authors:  Ivanka Kamenova; Linda Warfield; Steven Hahn
Journal:  Mol Cell Biol       Date:  2014-05-27       Impact factor: 4.272

5.  Emergence and expansion of TFIIB-like factors in the plant kingdom.

Authors:  Bruce A Knutson
Journal:  Gene       Date:  2013-04-20       Impact factor: 3.688

6.  Dynein Light Chain LC8 Is Required for RNA Polymerase I-Mediated Transcription in Trypanosoma brucei, Facilitating Assembly and Promoter Binding of Class I Transcription Factor A.

Authors:  Justin K Kirkham; Sung Hee Park; Tu N Nguyen; Ju Huck Lee; Arthur Günzl
Journal:  Mol Cell Biol       Date:  2015-10-12       Impact factor: 4.272

Review 7.  Nuclear PI3K signaling in cell growth and tumorigenesis.

Authors:  William J Davis; Peter Z Lehmann; Weimin Li
Journal:  Front Cell Dev Biol       Date:  2015-04-13

8.  Architecture of the Saccharomyces cerevisiae RNA polymerase I Core Factor complex.

Authors:  Bruce A Knutson; Jie Luo; Jeffrey Ranish; Steven Hahn
Journal:  Nat Struct Mol Biol       Date:  2014-08-17       Impact factor: 15.369

Review 9.  Specialization versus conservation: How Pol I and Pol III use the conserved architecture of the pre-initiation complex for specialized transcription.

Authors:  Niklas A Hoffmann; Yashar Sadian; Lucas Tafur; Jan Kosinski; Christoph W Müller
Journal:  Transcription       Date:  2016-06-21

10.  The σ enigma: bacterial σ factors, archaeal TFB and eukaryotic TFIIB are homologs.

Authors:  Samuel P Burton; Zachary F Burton
Journal:  Transcription       Date:  2014
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