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Literature DB >> 20127476

Characterization of plasmid pSY3 in Sphingobium chungbukense DJ77.

Abstract

This study determined the complete nucleotide sequence of the plasmid pSY3 from Sphingobium chungbukense DJ77. It was 35,735 bp long with a G+C content of 61.9%. Forty open reading frames (ORFs) were found. We predicted these ORFs would encode proteins associated with plasmid replication, conjugative transfer, transposition of genes, plasmid stability/partition, hypothetical protein, and some other functions. Genes for biodegradation were not found. No other plasmid homologous to pSY3 in the overall nucleotide sequence or gene organization could be found in the NCBI database.

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Year: 2010 PMID： 20127476 DOI： 10.1007/s12275-009-0329-x

Source DB: PubMed Journal: J Microbiol ISSN： 1225-8873 Impact factor: 3.422

11 in total

Review 1. Plasmid and chromosome partitioning: surprises from phylogeny.

Authors: K Gerdes; J Møller-Jensen; R Bugge Jensen
Journal: Mol Microbiol Date: 2000-08 Impact factor: 3.501

2. Biochemical activities of the parA partition protein of the P1 plasmid.

Authors: M A Davis; K A Martin; S J Austin
Journal: Mol Microbiol Date: 1992-05 Impact factor: 3.501

3. A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes.

Authors: Susanne M D Goldberg; Justin Johnson; Dana Busam; Tamara Feldblyum; Steve Ferriera; Robert Friedman; Aaron Halpern; Hoda Khouri; Saul A Kravitz; Federico M Lauro; Kelvin Li; Yu-Hui Rogers; Robert Strausberg; Granger Sutton; Luke Tallon; Torsten Thomas; Eli Venter; Marvin Frazier; J Craig Venter
Journal: Proc Natl Acad Sci U S A Date: 2006-07-13 Impact factor: 11.205

4. Sequence analysis of the phnD gene encoding 2-hydroxymuconic semialdehyde hydrolase in Pseudomonas sp. strain DJ77.

Authors: H J Shin; S J Kim; Y C Kim
Journal: Biochem Biophys Res Commun Date: 1997-03-17 Impact factor: 3.575

5. Partition of unit-copy miniplasmids to daughter cells. III. The DNA sequence and functional organization of the P1 partition region.

Authors: A L Abeles; S A Friedman; S J Austin
Journal: J Mol Biol Date: 1985-09-20 Impact factor: 5.469

10. Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold.

Authors: J E Walker; M Saraste; M J Runswick; N J Gay
Journal: EMBO J Date: 1982 Impact factor: 11.598

1 in total

1. Complete sequence and organization of the Sphingobium chungbukense DJ77 pSY2 plasmid.

Authors: Sun-Mi Yeon; Young-Chang Kim
Journal: J Microbiol Date: 2011-09-02 Impact factor: 3.422

1 in total

Characterization of plasmid pSY3 in Sphingobium chungbukense DJ77.

Review 1. Plasmid and chromosome partitioning: surprises from phylogeny.

2. Biochemical activities of the parA partition protein of the P1 plasmid.

3. A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes.

4. Sequence analysis of the phnD gene encoding 2-hydroxymuconic semialdehyde hydrolase in Pseudomonas sp. strain DJ77.

5. Partition of unit-copy miniplasmids to daughter cells. III. The DNA sequence and functional organization of the P1 partition region.

6. Detection and characterization of conjugative degradative plasmids in xenobiotic-degrading Sphingomonas strains.

7. Organization of three rRNA (rrn) operons from Sphingobium chungbukense DJ77.

8. Partition of P1 plasmids in Escherichia coli mukB chromosomal partition mutants.

9. Endogenous sphingolipid metabolites related to the growth in Sphingomonas chungbukensis.

10. Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold.

1. Complete sequence and organization of the Sphingobium chungbukense DJ77 pSY2 plasmid.