Literature DB >> 21871973

Molecular methods and platforms for infectious diseases testing a review of FDA-approved and cleared assays.

Rajyasree Emmadi1, Jerry B Boonyaratanakornkit, Rangaraj Selvarangan, Venkatakrishna Shyamala, Barbara L Zimmer, Laurina Williams, Bonita Bryant, Ted Schutzbank, Michele M Schoonmaker, Jean A Amos Wilson, Leslie Hall, Preeti Pancholi, Kathryn Bernard.   

Abstract

The superior sensitivity and specificity associated with the use of molecular assays has greatly improved the field of infectious disease diagnostics by providing clinicians with results that are both accurate and rapidly obtained. Herein, we review molecularly based infectious disease diagnostic tests that are Food and Drug Administration approved or cleared and commercially available in the United States as of December 31, 2010. We describe specific assays and their performance, as stated in the Food and Drug Administration's Summary of Safety and Effectiveness Data or the Office of In Vitro Diagnostic Device Evaluation and Safety's decision summaries, product inserts, or peer-reviewed literature. We summarize indications for testing, limitations, and challenges related to implementation in a clinical laboratory setting for a wide variety of common pathogens. The information presented in this review will be particularly useful for laboratories that plan to implement or expand their molecular offerings in the near term.
Copyright © 2011 American Society for Investigative Pathology and the Association for Molecular Pathology. Published by Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21871973      PMCID: PMC3194051          DOI: 10.1016/j.jmoldx.2011.05.011

Source DB:  PubMed          Journal:  J Mol Diagn        ISSN: 1525-1578            Impact factor:   5.568


  89 in total

1.  The expanded use of HPV testing in gynecologic practice per ASCCP-guided management requires the use of well-validated assays.

Authors:  Mark H Stoler; Philip E Castle; Diane Solomon; Mark Schiffman
Journal:  Am J Clin Pathol       Date:  2007-03       Impact factor: 2.493

2.  National survey of diagnostic services for genital herpes.

Authors:  A M Geretti; D W Brown
Journal:  Sex Transm Infect       Date:  2005-08       Impact factor: 3.519

3.  Early virologic response to treatment with peginterferon alfa-2b plus ribavirin in patients with chronic hepatitis C.

Authors:  Gary L Davis; John B Wong; John G McHutchison; Michael P Manns; Joann Harvey; Janice Albrecht
Journal:  Hepatology       Date:  2003-09       Impact factor: 17.425

4.  Performance characteristics of a quantitative hepatitis C virus RNA assay using COBAS AmpliPrep total nucleic acid isolation and COBAS taqman hepatitis C virus analyte-specific reagent.

Authors:  Michael S Forman; Alexandra Valsamakis
Journal:  J Mol Diagn       Date:  2008-02-14       Impact factor: 5.568

5.  Cost analysis of multiplex PCR testing for diagnosing respiratory virus infections.

Authors:  James B Mahony; Gord Blackhouse; Jesse Babwah; Marek Smieja; Sonya Buracond; Sylvia Chong; William Ciccotelli; Tim O'Shea; Daifallah Alnakhli; May Griffiths-Turner; Ron Goeree
Journal:  J Clin Microbiol       Date:  2009-07-01       Impact factor: 5.948

6.  Impact of rapid enterovirus molecular diagnosis on the management of infants, children, and adults with aseptic meningitis.

Authors:  C Archimbaud; M Chambon; J L Bailly; I Petit; C Henquell; A Mirand; B Aublet-Cuvelier; S Ughetto; J Beytout; P Clavelou; A Labbé; P Philippe; J Schmidt; C Regagnon; O Traore; H Peigue-Lafeuille
Journal:  J Med Virol       Date:  2009-01       Impact factor: 2.327

7.  Molecular and epidemiological evidence for spread of multiresistant methicillin-susceptible Staphylococcus aureus strains in hospitals.

Authors:  Pierre-Yves Donnio; Frédéric Février; Pablo Bifani; Marie Dehem; Christèle Kervégant; Nathalie Wilhelm; Anne-Lise Gautier-Lerestif; Nathalie Lafforgue; Michel Cormier; Alain Le Coustumier
Journal:  Antimicrob Agents Chemother       Date:  2007-08-20       Impact factor: 5.191

8.  Failure of the BD GeneOhm StaphSR assay for direct detection of methicillin-resistant and methicillin-susceptible Staphylococcus aureus isolates in positive blood cultures collected in the United States.

Authors:  James W Snyder; Gina K Munier; Stacy A Heckman; Pamela Camp; Timothy L Overman
Journal:  J Clin Microbiol       Date:  2009-09-30       Impact factor: 5.948

Review 9.  Molecular testing in the diagnosis and management of chronic hepatitis B.

Authors:  Alexandra Valsamakis
Journal:  Clin Microbiol Rev       Date:  2007-07       Impact factor: 26.132

10.  Correction of underquantification of human immunodeficiency virus type 1 load with the second version of the Roche Cobas AmpliPrep/Cobas TaqMan assay.

Authors:  A De Bel; D Marissens; L Debaisieux; C Liesnard; S Van den Wijngaert; S Lauwers; D Piérard
Journal:  J Clin Microbiol       Date:  2010-02-17       Impact factor: 5.948

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  25 in total

1.  Detection of toxigenic Clostridium difficile: comparison of the cell culture neutralization, Xpert C. difficile, Xpert C. difficile/Epi, and Illumigene C. difficile assays.

Authors:  P Pancholi; C Kelly; M Raczkowski; J M Balada-Llasat
Journal:  J Clin Microbiol       Date:  2012-01-25       Impact factor: 5.948

2.  Nucleic acid detection with CRISPR-Cas13a/C2c2.

Authors:  Jonathan S Gootenberg; Omar O Abudayyeh; Jeong Wook Lee; Patrick Essletzbichler; Aaron J Dy; Julia Joung; Vanessa Verdine; Nina Donghia; Nichole M Daringer; Catherine A Freije; Cameron Myhrvold; Roby P Bhattacharyya; Jonathan Livny; Aviv Regev; Eugene V Koonin; Deborah T Hung; Pardis C Sabeti; James J Collins; Feng Zhang
Journal:  Science       Date:  2017-04-13       Impact factor: 47.728

Review 3.  Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions.

Authors:  W Florian Fricke; David A Rasko
Journal:  Nat Rev Genet       Date:  2013-11-26       Impact factor: 53.242

4.  Synthesis of comb-shaped DNA using a non-nucleosidic branching phosphoramidite.

Authors:  Satheesh Ellipilli; John D Phillips; Jennifer M Heemstra
Journal:  Org Biomol Chem       Date:  2018-06-08       Impact factor: 3.876

5.  Comparison of BD GeneOhm Cdiff and Seegene Seeplex ACE PCR assays using toxigenic Clostridium difficile culture for direct detection of tcdB from stool specimens.

Authors:  Bo-Moon Shin; Se Jin Mun; Soo Jin Yoo; Eun Young Kuak
Journal:  J Clin Microbiol       Date:  2012-09-05       Impact factor: 5.948

6.  Conversion strategy using an expanded genetic alphabet to assay nucleic acids.

Authors:  Zunyi Yang; Michael Durante; Lyudmyla G Glushakova; Nidhi Sharma; Nicole A Leal; Kevin M Bradley; Fei Chen; Steven A Benner
Journal:  Anal Chem       Date:  2013-04-17       Impact factor: 6.986

7.  Evaluation of MolYsis™ Complete5 DNA extraction method for detecting Staphylococcus aureus DNA from whole blood in a sepsis model using PCR/pyrosequencing.

Authors:  Chase D McCann; Jeanne A Jordan
Journal:  J Microbiol Methods       Date:  2014-02-03       Impact factor: 2.363

8.  Workflow and maintenance characteristics of five automated laboratory instruments for the diagnosis of sexually transmitted infections.

Authors:  Sam Ratnam; Dan Jang; Jodi Gilchrist; Marek Smieja; Andre Poirier; Todd Hatchette; Jean-Frederic Flandin; Max Chernesky
Journal:  J Clin Microbiol       Date:  2014-04-16       Impact factor: 5.948

9.  Strategies for Optimizing the Diagnostic Predictive Value of Clostridium difficile Molecular Diagnostics.

Authors:  Larry K Kociolek
Journal:  J Clin Microbiol       Date:  2017-03-08       Impact factor: 5.948

Review 10.  Sepsis: frontiers in diagnosis, resuscitation and antibiotic therapy.

Authors:  Anders Perner; Anthony C Gordon; Daniel De Backer; George Dimopoulos; James A Russell; Jeffrey Lipman; Jens-Ulrik Jensen; John Myburgh; Mervyn Singer; Rinaldo Bellomo; Timothy Walsh
Journal:  Intensive Care Med       Date:  2016-10-01       Impact factor: 17.440

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